View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18129_low_11 (Length: 298)
Name: NF18129_low_11
Description: NF18129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18129_low_11 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 298
Target Start/End: Complemental strand, 38357226 - 38356940
Alignment:
| Q |
12 |
acagaggaagagagaatggaaaaagtcgataatatccgagtaatggcaagatcatcccctatggacaaacttttgatggtgcaatgcttaagaaagaaag |
111 |
Q |
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| T |
38357226 |
acagaggaagagagaatggaaaaagtcgataatatccgagtaatggcaagatcatcccctatggacaaacttttgatggtgcaatgcttaagaaagaaag |
38357127 |
T |
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| Q |
112 |
gtcatgtagttgcggtcacaggcgacggcacaaacgatgcacctgccttaaaagaagctgatataggactttctatgggaatccaaggaaccgaagtcgc |
211 |
Q |
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| T |
38357126 |
gtcatgtagttgcggtcacaggcgacggcacaaacgatgcacctgccttaaaagaagctgatataggactttctatgggaatccaaggaaccgaagtcgc |
38357027 |
T |
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| Q |
212 |
caaagaaagttccgatatcgtcatcttagacgacaacttcaattctgttgcaactgttttaaggtggggaagatgtgtttacaacaa |
298 |
Q |
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| T |
38357026 |
caaagaaagttccgatatcgtcatcttagacgacaacttcaattctgttgcaactgttttaaggtggggaagatgtgtttacaacaa |
38356940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 54 - 298
Target Start/End: Complemental strand, 4236240 - 4235996
Alignment:
| Q |
54 |
atggcaagatcatcccctatggacaaacttttgatggtgcaatgcttaagaaagaaaggtcatgtagttgcggtcacaggcgacggcacaaacgatgcac |
153 |
Q |
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| T |
4236240 |
atggcaagatcttctccatttgataaacttctaatggtacaatgcttaaaacaaaaaggtcatgtagttgctgtaaccggagacggaacaaacgatgcac |
4236141 |
T |
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| Q |
154 |
ctgccttaaaagaagctgatataggactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatatcgtcatcttagacgacaacttcaa |
253 |
Q |
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| T |
4236140 |
cagcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattagatgacaattttgc |
4236041 |
T |
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| Q |
254 |
ttctgttgcaactgttttaaggtggggaagatgtgtttacaacaa |
298 |
Q |
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| T |
4236040 |
atctattgtaacagttataaattggggaagatgtgtttacaacaa |
4235996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 54 - 298
Target Start/End: Complemental strand, 6185364 - 6185120
Alignment:
| Q |
54 |
atggcaagatcatcccctatggacaaacttttgatggtgcaatgcttaagaaagaaaggtcatgtagttgcggtcacaggcgacggcacaaacgatgcac |
153 |
Q |
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| T |
6185364 |
atggcaagatcatctccatttgacaaacttctaatggttcaatgcttaaaacaaaaaggtcatgtagttgctgtaacaggagatggaacaaacgatgcac |
6185265 |
T |
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| Q |
154 |
ctgccttaaaagaagctgatataggactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatatcgtcatcttagacgacaacttcaa |
253 |
Q |
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| T |
6185264 |
cggcattgaaagaagccgatatcggactttcaatgggaattcaaggtactgaagttgcaaaagagagttcagatattgttatattagatgacaattttgc |
6185165 |
T |
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| Q |
254 |
ttctgttgcaactgttttaaggtggggaagatgtgtttacaacaa |
298 |
Q |
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| T |
6185164 |
atctatcgtaacagtgttaaactggggaagatgtgtttacaacaa |
6185120 |
T |
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