View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18129_low_16 (Length: 236)
Name: NF18129_low_16
Description: NF18129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18129_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 52783688 - 52783897
Alignment:
| Q |
11 |
tagagtttttgacatcatttgtttgttgatgtcattgccaaagaactctaacaaaataattaagagtagtagactaataatttcgcgttatggatcacaa |
110 |
Q |
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| T |
52783688 |
tagagtttttgacatcatttgtttgttgatgtcattgccaaagaactctaacaaaataattaagagtagtagactaataatttcgcgttatggatcacaa |
52783787 |
T |
|
| Q |
111 |
aatttctcaataaagaaattgacaattttctataaactaacttgtgggtcggttcgatccaccctgtcaccgccctcactttttcatagttaaactgaac |
210 |
Q |
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| T |
52783788 |
aatttctcaataaagaaattgacaattttctataaactaacttgtaggtcggttcgatccacccggtcaccgccctcactttttcatagttaaactgaac |
52783887 |
T |
|
| Q |
211 |
ggactaacat |
220 |
Q |
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|||||||||| |
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| T |
52783888 |
ggactaacat |
52783897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 52789952 - 52790161
Alignment:
| Q |
11 |
tagagtttttgacatcatttgtttgttgatgtcattgccaaagaactctaacaaaataattaagagtagtagactaataatttcgcgttatggatcacaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52789952 |
tagagtttttgacatcatttgtttgttgatgtcattgccaaagaactctaacaaaataattaagagtagtagactaataatttcgcgttatggatcacaa |
52790051 |
T |
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| Q |
111 |
aatttctcaataaagaaattgacaattttctataaactaacttgtgggtcggttcgatccaccctgtcaccgccctcactttttcatagttaaactgaac |
210 |
Q |
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| T |
52790052 |
aatttctcaataaagaaattgacaattttctataaactaacttgtaggtcggttcgatccacccggtcaccgccctcactttttcatagttaaactgaac |
52790151 |
T |
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| Q |
211 |
ggactaacat |
220 |
Q |
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|||||||||| |
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| T |
52790152 |
ggactaacat |
52790161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 10232046 - 10232087
Alignment:
| Q |
32 |
tttgttgatgtcattgccaaagaactctaacaaaataattaa |
73 |
Q |
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||||||||||||||||||||| || ||||||||||||||||| |
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| T |
10232046 |
tttgttgatgtcattgccaaaaaattctaacaaaataattaa |
10232087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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