View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18129_low_19 (Length: 219)

Name: NF18129_low_19
Description: NF18129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18129_low_19
NF18129_low_19
[»] chr8 (15 HSPs)
chr8 (12-200)||(7977865-7978053)
chr8 (137-200)||(14961666-14961729)
chr8 (137-200)||(28014861-28014924)
chr8 (137-200)||(38212947-38213010)
chr8 (148-200)||(31812236-31812288)
chr8 (137-200)||(3306058-3306121)
chr8 (137-196)||(9580116-9580175)
chr8 (137-200)||(9825065-9825128)
chr8 (137-200)||(27874684-27874747)
chr8 (137-196)||(36967077-36967136)
chr8 (131-200)||(13327944-13328013)
chr8 (131-200)||(29642709-29642778)
chr8 (148-200)||(26834684-26834736)
chr8 (140-200)||(32186301-32186361)
chr8 (140-200)||(40225990-40226050)
[»] chr4 (20 HSPs)
chr4 (137-200)||(27019372-27019435)
chr4 (140-196)||(55813979-55814035)
chr4 (137-200)||(18882270-18882333)
chr4 (137-200)||(19468306-19468369)
chr4 (148-200)||(27362514-27362566)
chr4 (144-199)||(38222405-38222461)
chr4 (149-200)||(16667387-16667438)
chr4 (137-200)||(19450903-19450966)
chr4 (137-200)||(24684949-24685012)
chr4 (137-200)||(50352414-50352477)
chr4 (137-200)||(52391410-52391473)
chr4 (134-200)||(47326895-47326961)
chr4 (134-200)||(47341691-47341757)
chr4 (131-200)||(4329700-4329769)
chr4 (143-200)||(23545594-23545651)
chr4 (140-200)||(4779439-4779499)
chr4 (160-200)||(23553705-23553745)
chr4 (136-200)||(40049669-40049733)
chr4 (137-173)||(41970495-41970531)
chr4 (144-200)||(44916646-44916702)
[»] chr5 (10 HSPs)
chr5 (140-200)||(31567494-31567554)
chr5 (140-200)||(40980488-40980548)
chr5 (137-200)||(3398332-3398395)
chr5 (140-189)||(18841719-18841768)
chr5 (137-200)||(6863668-6863731)
chr5 (137-200)||(23995419-23995482)
chr5 (137-200)||(32019987-32020050)
chr5 (137-195)||(36474637-36474695)
chr5 (140-200)||(15240953-15241013)
chr5 (148-200)||(30893752-30893804)
[»] chr1 (12 HSPs)
chr1 (147-200)||(34802089-34802142)
chr1 (143-200)||(39310789-39310846)
chr1 (143-200)||(13321994-13322051)
chr1 (137-200)||(5057114-5057177)
chr1 (137-200)||(6180298-6180361)
chr1 (137-200)||(23576417-23576480)
chr1 (137-200)||(35512837-35512900)
chr1 (137-200)||(38812852-38812915)
chr1 (144-200)||(25532328-25532384)
chr1 (148-200)||(30172002-30172054)
chr1 (148-200)||(30187543-30187595)
chr1 (140-200)||(39781456-39781516)
[»] chr2 (9 HSPs)
chr2 (140-200)||(26003349-26003409)
chr2 (137-200)||(43806472-43806535)
chr2 (137-200)||(4576329-4576392)
chr2 (137-200)||(15411625-15411688)
chr2 (143-200)||(7720233-7720290)
chr2 (143-200)||(8065241-8065298)
chr2 (131-196)||(8770893-8770958)
chr2 (140-200)||(5853466-5853526)
chr2 (140-200)||(16493535-16493595)
[»] chr7 (12 HSPs)
chr7 (137-200)||(4969885-4969948)
chr7 (137-200)||(25709402-25709465)
chr7 (137-200)||(26037205-26037268)
chr7 (147-200)||(7899489-7899542)
chr7 (136-200)||(26050464-26050528)
chr7 (136-200)||(26059823-26059887)
chr7 (137-200)||(26300683-26300746)
chr7 (137-200)||(29398137-29398200)
chr7 (137-200)||(33343100-33343163)
chr7 (137-200)||(45501571-45501634)
chr7 (131-200)||(9332067-9332136)
chr7 (160-200)||(5833490-5833530)
[»] chr6 (10 HSPs)
chr6 (137-200)||(34692466-34692529)
chr6 (131-200)||(31568215-31568284)
chr6 (148-200)||(6016979-6017031)
chr6 (148-200)||(10887152-10887204)
chr6 (145-200)||(29065428-29065483)
chr6 (145-200)||(29074441-29074496)
chr6 (145-200)||(29079205-29079260)
chr6 (145-200)||(29107014-29107069)
chr6 (145-200)||(29120281-29120336)
chr6 (137-200)||(30591166-30591229)
[»] chr3 (10 HSPs)
chr3 (137-200)||(2566594-2566657)
chr3 (143-200)||(50204521-50204578)
chr3 (148-200)||(23523069-23523121)
chr3 (148-200)||(38389570-38389622)
chr3 (137-200)||(8165758-8165821)
chr3 (137-200)||(23803049-23803112)
chr3 (158-200)||(9247869-9247911)
chr3 (137-200)||(51567823-51567883)
chr3 (140-200)||(33474476-33474536)
chr3 (144-200)||(40930170-40930226)
[»] scaffold0111 (1 HSPs)
scaffold0111 (137-200)||(41094-41157)
[»] scaffold0727 (1 HSPs)
scaffold0727 (160-200)||(5826-5866)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 7977865 - 7978053
Alignment:
Q  12 aagcaaagggataataacatatagaggttagtacattctacagtatttgtggcaataatagatacaatgaaaacaagaggacacaatcaattaagtgtgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7977865 aagcaaagggataataacatatagaggttagtacattctacagtatttgtggcaataatagatacaatgaaaacaagaggacacaatcatttaagtgtgt 7977964  T
Q  112 ctaaaactgatttgtacacaaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  7977965 ctacaactgatttgtacacaaacaaaagtttcaatacaaaattaccattttaaactttttaacatttgcaaatttgcatatgatagaaa 7978053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 14961729 - 14961666
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||||||| ||||||| ||| ||| ||| |||||||||||| ||||||||||    
T  14961729 aagttccaatacaaaattactattttaaacttcttagcatgtgcaaatttgcacatgatagaaa 14961666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 28014924 - 28014861
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  28014924 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 28014861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 38213010 - 38212947
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||| |||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  38213010 aagtttcaatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 38212947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 31812236 - 31812288
Alignment:
Q  148 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||||||||| ||| |||| || |||||||||||| ||||||||||    
T  31812236 caaaattaccattttaaacttcttaatatgtgcaaatttgcacatgatagaaa 31812288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 3306121 - 3306058
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||| |||| |||| |||||||  || ||||||| |||||||||||| ||||||||||    
T  3306121 aagtttcaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaa 3306058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 9580175 - 9580116
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgata 196  Q
    |||||||||||||||||| | ||||||| ||| ||||||| || ||||||||| ||||||    
T  9580175 aagtttcaatacaaaatttctattttaaacttcttaacatgtgtaaatttgcacatgata 9580116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 9825065 - 9825128
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||| |||||  |||||||||||| |||||||||| |||| |||| || ||||||||||    
T  9825065 aagtttcaagacaaacctaccattttaatttttttaacatgtgcatatttacacatgatagaaa 9825128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 27874747 - 27874684
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||||||||||||   ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  27874747 aagttccaatacaaaatttgtattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 27874684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 36967136 - 36967077
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgata 196  Q
    ||||||||||||||| || | ||||||| ||| ||||||| |||||||||||| ||||||    
T  36967136 aagtttcaatacaaagtttctattttaaacttcttaacatgtgcaaatttgcacatgata 36967077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 13328013 - 13327944
Alignment:
Q  131 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||  |||| |||| | ||||| ||| ||||||| |||||||||||| ||||||||||    
T  13328013 aaacacaagtttcaagtcaaagttactaatttaaacttcttaacatgtgcaaatttgcacatgatagaaa 13327944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 29642709 - 29642778
Alignment:
Q  131 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||||||||| ||||| ||||||||||||  |  ||| ||| |||||||||||| ||||||||||    
T  29642709 aaacacaagtttcaagacaaacttaccattttaaattccttatcatatgcaaatttgcacatgatagaaa 29642778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 26834684 - 26834736
Alignment:
Q  148 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||||||||  || |||| || |||||||||||| ||||||||||    
T  26834684 caaaattaccattttaaatttcttaatatatgcaaatttgcacatgatagaaa 26834736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 32186301 - 32186361
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||| |||||| | ||||||| ||| ||||||| |||||||||||| | ||||||||    
T  32186301 tttcaatataaaatttctattttaaacttattaacatatgcaaatttgcacacgatagaaa 32186361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 40226050 - 40225990
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||| ||||||| | ||| ||| ||| ||||||| |||||||||||| ||||||||||    
T  40226050 tttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaa 40225990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 27019372 - 27019435
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||||||||| | ||||||| ||||||||||| |||||||||||| ||||||||||    
T  27019372 aagtttcaatacaaaatttctattttaaactttttaacatatgcaaatttgcacatgatagaaa 27019435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 55813979 - 55814035
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgata 196  Q
    ||||||||||||||||  ||||||| ||||||||||| |||||||||||| ||||||    
T  55813979 tttcaatacaaaattattattttaaactttttaacatgtgcaaatttgcatatgata 55814035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 18882333 - 18882270
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  18882333 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 18882270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 19468306 - 19468369
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||||||||| | ||||||| ||| ||||||| |||||||||||| || |||||||    
T  19468306 aagtttcaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacataatagaaa 19468369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 27362514 - 27362566
Alignment:
Q  148 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||| ||||| ||| ||||||| |||||||||||| ||||||||||    
T  27362514 caaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaa 27362566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 38222405 - 38222461
Alignment:
Q  144 aatacaaaatt-accattttaatctttttaacatttgcaaatttgcagatgatagaa 199  Q
    ||||||||||| || |||||||| |||||||||| || |||||||||||||||||||    
T  38222405 aatacaaaatttacaattttaatttttttaacatgtgtaaatttgcagatgatagaa 38222461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 16667438 - 16667387
Alignment:
Q  149 aaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||| |||||||| ||| ||||||| |||||||||||| ||||||||||    
T  16667438 aaaattatcattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 16667387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 19450966 - 19450903
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| || |||||||    
T  19450966 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacataatagaaa 19450903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 24684949 - 24685012
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||| ||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  24684949 aagttccaatgcaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 24685012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 50352414 - 50352477
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||| ||||||||| |||||||  || ||||||| |||||||||||| ||||||||||    
T  50352414 aagttccaatgcaaaattactattttaaatttcttaacatgtgcaaatttgcatatgatagaaa 50352477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 52391410 - 52391473
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| ||||||||| || ||||||||||    
T  52391410 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttacacatgatagaaa 52391473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 47326961 - 47326895
Alignment:
Q  134 caaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||| |||  |||| |||||| ||||| ||| ||||||| |||||||||||| ||||||||||    
T  47326961 caaaagttccaagtcaaagttaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaa 47326895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 47341757 - 47341691
Alignment:
Q  134 caaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||| |||  |||| |||||| ||||| ||| ||||||| |||||||||||| ||||||||||    
T  47341757 caaaagttccaagtcaaagttaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaa 47341691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 4329700 - 4329769
Alignment:
Q  131 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| || ||||||  |||| |||| | ||||| ||||||||||| |||||||||||| ||||||||||    
T  4329700 aaacataaatttcaagtcaaagttactactttaaactttttaacatatgcaaatttgcacatgatagaaa 4329769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 23545594 - 23545651
Alignment:
Q  143 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||||   ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  23545594 caatacaaaatttatattttaaacttattaacatgtgcaaatttgcacatgatagaaa 23545651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 4779499 - 4779439
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||| ||||||| | ||| ||| ||| ||||||| |||||||||||| ||||||||||    
T  4779499 tttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaa 4779439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 23553705 - 23553745
Alignment:
Q  160 tttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||||||||||| |||||||||||| ||||||||||    
T  23553705 tttaaactttttaacatgtgcaaatttgcacatgatagaaa 23553745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 40049669 - 40049733
Alignment:
Q  136 aaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||| |||| ||||||||| |||||||  || ||||||| |||||||||||| || |||||||    
T  40049669 aaagttccaatgcaaaattactattttaaatttcttaacatgtgcaaatttgcacataatagaaa 40049733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 41970495 - 41970531
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaa 173  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  41970495 aagtttcaatacaaaattactattttaaactttttaa 41970531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 44916702 - 44916646
Alignment:
Q  144 aatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||| | |||||||  ||||||| || |||||||||||| ||||||||||    
T  44916702 aatacaaaatttctattttaaattttttaatatgtgcaaatttgcacatgatagaaa 44916646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 31567554 - 31567494
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||| ||||||||||||||||||  |||||||||| |||||||||||| ||||||||||    
T  31567554 tttcaagacaaaattaccattttaaattttttaacatgtgcaaatttgcatatgatagaaa 31567494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 40980488 - 40980548
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||||||| ||||||||||    
T  40980488 tttcaatacaaaatttctattttaaactttttaatatgtgcaaatttgcacatgatagaaa 40980548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 3398332 - 3398395
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  3398332 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 3398395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 18841768 - 18841719
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgca 189  Q
    ||||||||||||||| | ||||||| ||||||||||| ||||||||||||    
T  18841768 tttcaatacaaaatttctattttaaactttttaacatatgcaaatttgca 18841719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 6863668 - 6863731
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||||| ||| |||| |||||||  |||||||||| |||||||||||| ||||||||||    
T  6863668 aagttccaatataaagttactattttaaattttttaacatgtgcaaatttgcacatgatagaaa 6863731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 23995482 - 23995419
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||| |||||||| ||||||| ||| ||||||| | |||||||||| || |||||||    
T  23995482 aagtttcaatataaaattactattttaaacttcttaacatgtacaaatttgcacataatagaaa 23995419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 32020050 - 32019987
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||| ||||| ||||||||||||  || ||||||| |||||||||||| ||||||||||    
T  32020050 aagttccaagacaaacttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaa 32019987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 36474695 - 36474637
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgat 195  Q
    |||||||||||||||||| | ||||||| |||||||| || ||||| |||||| |||||    
T  36474695 aagtttcaatacaaaatttctattttaaactttttaatatgtgcaattttgcacatgat 36474637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 15241013 - 15240953
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||| |||  ||||| | ||||||||||| | |||||||||| ||||||||||    
T  15241013 tttcaatacaaatttaatattttgaactttttaacatgtacaaatttgcacatgatagaaa 15240953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 30893752 - 30893804
Alignment:
Q  148 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||| |||| ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  30893752 caaagttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 30893804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 34802089 - 34802142
Alignment:
Q  147 acaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||    
T  34802089 acaaaattaccattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 34802142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 39310846 - 39310789
Alignment:
Q  143 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||| | ||||||| ||||||||||| |||||||||||| ||||||||||    
T  39310846 caatacaaaatttctattttaaactttttaacatgtgcaaatttgcacatgatagaaa 39310789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 13321994 - 13322051
Alignment:
Q  143 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  13321994 caatacaaaatttctattttaaacttcttaacatatgcaaatttgcacatgatagaaa 13322051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 5057114 - 5057177
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||  |||| |||||| ||||| ||||| |||||||||||||||||| || |||||||    
T  5057114 aagtttcaagtcaaagttaccactttaaacttttgaacatttgcaaatttgcatataatagaaa 5057177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 6180298 - 6180361
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||||| |||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  6180298 aagttccaatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 6180361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 23576480 - 23576417
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||| |||| |||| |||||||  || ||||||| |||||||||||| ||||||||||    
T  23576480 aagtttcaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaa 23576417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 35512837 - 35512900
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||||| |||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  35512837 aagttccaatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 35512900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 38812852 - 38812915
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||| |||||| | ||||| | ||| ||||||| |||||||||||| ||||||||||    
T  38812852 aagtttcaatataaaatttctattttgaacttcttaacatgtgcaaatttgcacatgatagaaa 38812915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 25532328 - 25532384
Alignment:
Q  144 aatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||| |  |||||| |||||||||||  ||||||||||| ||||||||||    
T  25532328 aatacaaaatttcttttttaaactttttaacatgcgcaaatttgcatatgatagaaa 25532384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 30172002 - 30172054
Alignment:
Q  148 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||| |||||| ||||| ||| ||||||| |||||||||||| ||||||||||    
T  30172002 caaagttaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaa 30172054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 30187543 - 30187595
Alignment:
Q  148 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||| |||||| ||||| ||| ||||||| |||||||||||| ||||||||||    
T  30187543 caaagttaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaa 30187595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 39781456 - 39781516
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||||||   |||| || ||||||||||| ||||||| |||| ||||||||||    
T  39781456 tttcaatacaaaatttttatttaaaactttttaacatgtgcaaatatgcacatgatagaaa 39781516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 26003409 - 26003349
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  26003409 tttcaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 26003349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 43806472 - 43806535
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||||||||| | ||||||| ||||||||||| ||||||||| || | ||||||||    
T  43806472 aagtttcaatacaaaatttctattttaaactttttaacatgtgcaaatttacacacgatagaaa 43806535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 4576392 - 4576329
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||||||||| | |||||||  || ||||||| ||| |||||||| ||||||||||    
T  4576392 aagtttcaatacaaaatttctattttaaatttcttaacatatgcgaatttgcacatgatagaaa 4576329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 15411688 - 15411625
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||| ||||| |||| ||||||| ||| ||||||| |||||||||||| ||| ||||||    
T  15411688 aagtttcaagacaaagttactattttaaacttcttaacatgtgcaaatttgcacatgttagaaa 15411625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 7720233 - 7720290
Alignment:
Q  143 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||| | || |||| ||||||||||  |||||||||||| ||||||||||    
T  7720233 caatacaaaatttctatcttaaactttttaacacgtgcaaatttgcacatgatagaaa 7720290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 8065241 - 8065298
Alignment:
Q  143 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  8065241 caatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 8065298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 8770958 - 8770893
Alignment:
Q  131 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgata 196  Q
    |||||||| ||||||  ||||||||| | ||||| ||| ||||||| |||||||||||| ||||||    
T  8770958 aaacaaaaatttcaagtcaaaattactactttaaacttcttaacatgtgcaaatttgcacatgata 8770893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 5853526 - 5853466
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||| ||||||| | ||| ||| ||| ||||||| |||||||||||| ||||||||||    
T  5853526 tttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaa 5853466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 16493595 - 16493535
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||| ||||||| | ||| ||| ||| ||||||| |||||||||||| ||||||||||    
T  16493595 tttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaa 16493535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 4969885 - 4969948
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  4969885 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 4969948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 25709465 - 25709402
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||||||||| |||| ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  25709465 aagttccaatacaaagttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 25709402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 26037205 - 26037268
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  26037205 aagttccaatacaaaatttctattttaaacttcttaacatctgcaaatttgcacatgatagaaa 26037268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 7899542 - 7899489
Alignment:
Q  147 acaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||||||||||||  |||||||||| |||||||||||| ||||||||||    
T  7899542 acaaacttaccattttaaattttttaacatgtgcaaatttgcacatgatagaaa 7899489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 26050528 - 26050464
Alignment:
Q  136 aaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||| ||| ||||| ||||||||||||  || ||||||| |||||||||||| ||||||||||    
T  26050528 aaagttacaagacaaatttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaa 26050464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 26059887 - 26059823
Alignment:
Q  136 aaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||| ||| ||||| ||||||||||||  || ||||||| |||||||||||| ||||||||||    
T  26059887 aaagttacaagacaaatttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaa 26059823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 26300683 - 26300746
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||| |||| |||| ||||||| ||||||||||| |||||||||| | ||||| ||||    
T  26300683 aagtttcaattcaaagttactattttaaactttttaacatgtgcaaatttgtacatgatggaaa 26300746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 29398200 - 29398137
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||| | ||||||||||    
T  29398200 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgaacatgatagaaa 29398137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 33343100 - 33343163
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||||||||| |||| |||||||  || ||||||| |||||||||||| ||||||||||    
T  33343100 aagttccaatacaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaa 33343163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 45501571 - 45501634
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||||| | ||||||| ||| |||| || |||||||||||| ||||||||||    
T  45501571 aagttccaatacaaaatttctattttaaacttcttaagatgtgcaaatttgcacatgatagaaa 45501634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 9332067 - 9332136
Alignment:
Q  131 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||  |||| |||| | ||||| ||| ||||||| |||||||||||| ||||||||||    
T  9332067 aaacacaagtttcaagtcaaagttactaatttaaacttcttaacatgtgcaaatttgcacatgatagaaa 9332136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 5833490 - 5833530
Alignment:
Q  160 tttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||||||||||| |||||||||||| ||||||||||    
T  5833490 tttaaactttttaacatgtgcaaatttgcacatgatagaaa 5833530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 34692466 - 34692529
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  34692466 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 34692529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 31568215 - 31568284
Alignment:
Q  131 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||||||||  |||| |||| | ||||| ||||||||||| |||||||||||| ||||||||||    
T  31568215 aaacacaagtttcaaatcaaagttactactttaaactttttaacatgtgcaaatttgcacatgatagaaa 31568284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 6016979 - 6017031
Alignment:
Q  148 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||| |||||| ||||| ||||||||||| |||||||||||| ||||||||||    
T  6016979 caaagttaccactttaaactttttaacatgtgcaaatttgcacatgatagaaa 6017031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 10887152 - 10887204
Alignment:
Q  148 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||| ||||| ||| ||||||| |||||||||||| ||||||||||    
T  10887152 caaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaa 10887204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 29065483 - 29065428
Alignment:
Q  145 atacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||| ||||| ||||||| ||||||||||| ||||| |||||| ||||||||||    
T  29065483 atacaatattactattttaaactttttaacatgtgcaagtttgcacatgatagaaa 29065428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 29074496 - 29074441
Alignment:
Q  145 atacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||| ||||| ||||||| ||||||||||| ||||| |||||| ||||||||||    
T  29074496 atacaatattacaattttaaactttttaacatgtgcaagtttgcacatgatagaaa 29074441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 29079260 - 29079205
Alignment:
Q  145 atacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||| ||||| ||||||| ||||||||||| ||||| |||||| ||||||||||    
T  29079260 atacaatattacaattttaaactttttaacatgtgcaagtttgcacatgatagaaa 29079205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 29107069 - 29107014
Alignment:
Q  145 atacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||| ||||| ||||||| ||||||||||| ||||| |||||| ||||||||||    
T  29107069 atacaatattacaattttaaactttttaacatgtgcaagtttgcacatgatagaaa 29107014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 29120336 - 29120281
Alignment:
Q  145 atacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||| ||||| ||||||| ||||||||||| ||||| |||||| ||||||||||    
T  29120336 atacaatattactattttaaactttttaacatgtgcaagtttgcacatgatagaaa 29120281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 30591229 - 30591166
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||| |||||||||||||| || ||| ||||||| || ||||||||| ||||||||||    
T  30591229 aagttacaatgcaaaattaccatttaaaacttcttaacatgtgtaaatttgcacatgatagaaa 30591166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 2566594 - 2566657
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||||||||||| |||||||  ||| |||||| || ||||||||| ||||||||||    
T  2566594 aagtttcaatacaaaattactattttaaattttctaacatgtgtaaatttgcacatgatagaaa 2566657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 50204521 - 50204578
Alignment:
Q  143 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  50204521 caatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 50204578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 23523069 - 23523121
Alignment:
Q  148 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||| ||||| ||| ||||||| |||||||||||| ||||||||||    
T  23523069 caaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaa 23523121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 38389570 - 38389622
Alignment:
Q  148 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||||| ||||| ||| ||||||| |||||||||||| ||||||||||    
T  38389570 caaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaa 38389622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 8165758 - 8165821
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||||||||||||   ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  8165758 aagttccaatacaaaatttatattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 8165821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 23803112 - 23803049
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| |||| ||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  23803112 aagttccaatgcaaaatttctattttaaacttcttaacatgtgcaaatttgcatatgatagaaa 23803049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 9247869 - 9247911
Alignment:
Q  158 attttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||    
T  9247869 attttaatcattttaacatatgcaaatttgcacatgatagaaa 9247911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 51567883 - 51567823
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||||||||| | ||||||| |||   ||||| |||||||||||| ||||||||||    
T  51567883 aagtttcaatacaaaatttctattttaaactt---aacatgtgcaaatttgcacatgatagaaa 51567823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 33474536 - 33474476
Alignment:
Q  140 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||||| ||||||| | ||| ||| ||| ||||||| |||||||||||| ||||||||||    
T  33474536 tttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaa 33474476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 40930170 - 40930226
Alignment:
Q  144 aatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||| |||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  40930170 aatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 40930226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 41094 - 41157
Alignment:
Q  137 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    |||||||||||||||||||  ||||||| ||| ||||||| | ||||||| || ||||||||||    
T  41094 aagtttcaatacaaaattattattttaaacttcttaacatatacaaatttacacatgatagaaa 41157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 5826 - 5866
Alignment:
Q  160 tttaatctttttaacatttgcaaatttgcagatgatagaaa 200  Q
    ||||| ||||||||||| |||||||||||| ||||||||||    
T  5826 tttaaactttttaacatgtgcaaatttgcacatgatagaaa 5866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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