View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18129_low_4 (Length: 408)

Name: NF18129_low_4
Description: NF18129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18129_low_4
NF18129_low_4
[»] chr4 (5 HSPs)
chr4 (12-393)||(25020985-25021363)
chr4 (29-100)||(26869421-26869492)
chr4 (63-131)||(38767116-38767184)
chr4 (144-190)||(3083392-3083437)
chr4 (12-97)||(20230224-20230309)
[»] chr7 (4 HSPs)
chr7 (12-133)||(32521554-32521675)
chr7 (142-197)||(4962474-4962529)
chr7 (144-190)||(39436803-39436849)
chr7 (147-197)||(44549234-44549284)
[»] chr6 (2 HSPs)
chr6 (145-197)||(33490701-33490753)
chr6 (17-108)||(11171995-11172086)
[»] chr3 (7 HSPs)
chr3 (147-197)||(21970178-21970228)
chr3 (147-197)||(21992614-21992664)
chr3 (42-124)||(44909926-44910008)
chr3 (144-197)||(22152391-22152444)
chr3 (144-186)||(25995174-25995216)
chr3 (144-197)||(5846373-5846426)
chr3 (144-196)||(30805778-30805830)
[»] chr8 (2 HSPs)
chr8 (145-197)||(1170635-1170687)
chr8 (144-172)||(15920182-15920210)
[»] chr1 (4 HSPs)
chr1 (154-197)||(8209322-8209365)
chr1 (144-197)||(4353618-4353671)
chr1 (144-197)||(11409119-11409171)
chr1 (145-197)||(48715753-48715805)
[»] chr2 (3 HSPs)
chr2 (144-190)||(38801846-38801892)
chr2 (160-197)||(360487-360524)
chr2 (145-197)||(17372542-17372594)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 393
Target Start/End: Original strand, 25020985 - 25021363
Alignment:
Q  12 atcatcaagcagagaagttaaatatttcttttcaataatctatatgatattaaaatgaaaagtcgaagttatttaaggttttgattctttgtcttttgaa 111  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  25020985 atcaacaagcagaaaagttaaatatttcttttcaacaatctatatgatattaaaaagaaaagtcgaagttatttaaggttttgattctttgtcttttgga 25021084  T
Q  112 aacaacaactcatgctcaatggtccctattattttgaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcatnnnnnnnnnntatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||          ||||    
T  25021085 aacaacaactcatgctcaatggtccctattattttgaaagtcacaaatatttatattcatatctttaatcaaaattaaactttcataaaaaaaaa-tatg 25021183  T
Q  212 gttcataatttacaaatgttagcataatttagttccttttgtaaatcttgtacatgttcctccttattttttctctgagtctcaagtttataaaataagt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  25021184 gttcataatttacaaatgttagcataatttagttccttttgtaaatcttgtacatgttcctccttattttttct--gagtctcaagtttataaaataagt 25021281  T
Q  312 tgtacattctttcttctcgtgtttgtgttcttagtttgtatacactatatctttttgatgttgtagagtattccaagaatat 393  Q
    |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25021282 tgtacattctttcttctcctgtttgtgtttttagtttgtatacagtatatctttttgatgttgtagagtattccaagaatat 25021363  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 26869421 - 26869492
Alignment:
Q  29 ttaaatatttcttttcaataatctatatgatattaaaatgaaaagtcgaagttatttaaggttttgattctt 100  Q
    ||||||||||  |||||| ||||||| |||||| ||||| | ||||| || |||||||||||||||||||||    
T  26869421 ttaaatattttctttcaacaatctatctgatatgaaaataagaagtcaaaattatttaaggttttgattctt 26869492  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 38767184 - 38767116
Alignment:
Q  63 aaaatgaaaagtcgaagttatttaaggttttgattctttgtcttttgaaaacaacaactcatgctcaat 131  Q
    ||||||| || || || ||||||||||||||||||  |||||||| |||| ||| ||||||||||||||    
T  38767184 aaaatgagaaatcaaaattatttaaggttttgatttattgtctttagaaagcaataactcatgctcaat 38767116  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 3083392 - 3083437
Alignment:
Q  144 tttgaaagtcacaaatatttatatttatatctttaatcaaaattaaa 190  Q
    |||||||||||||||||||| || |||||| ||||||||||||||||    
T  3083392 tttgaaagtcacaaatatttgtacttatat-tttaatcaaaattaaa 3083437  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 20230224 - 20230309
Alignment:
Q  12 atcatcaagcagagaagttaaatatttcttttcaataatctatatgatattaaaatgaaaagtcgaagttatttaaggttttgatt 97  Q
    |||| |||| ||| || |||| |||||  |||||| ||||||| |||||  ||||||| ||||| || ||||||||||||||||||    
T  20230224 atcaacaagaagataaattaagtattttctttcaacaatctatctgatacgaaaatgagaagtcaaaattatttaaggttttgatt 20230309  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 32521554 - 32521675
Alignment:
Q  12 atcatcaagcagagaagttaaatatttcttttcaataatctatatgatattaaaatgaaaagtcgaagttatttaaggttttgattctttgtcttttgaa 111  Q
    |||| |||||||| || ||||||||||| ||||| || ||||| |||| | ||||||| ||||| || |||||||||||||  |||| ||||||||||||    
T  32521554 atcaacaagcagataatttaaatatttcctttcattagtctatttgatttaaaaatgagaagtcaaaattatttaaggtttcaattccttgtcttttgaa 32521653  T
Q  112 aacaacaactcatgctcaatgg 133  Q
    |  || |||| |||||||||||    
T  32521654 agtaataacttatgctcaatgg 32521675  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 4962474 - 4962529
Alignment:
Q  142 attttgaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    |||||||||||||||| ||||||||||||||  |||||||||||| ||| ||||||    
T  4962474 attttgaaagtcacaagtatttatatttatagttttaatcaaaatcaaaatttcat 4962529  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 39436849 - 39436803
Alignment:
Q  144 tttgaaagtcacaaatatttatatttatatctttaatcaaaattaaa 190  Q
    ||||||| |||||||||||||||||||||  ||||||||| ||||||    
T  39436849 tttgaaaatcacaaatatttatatttataattttaatcaatattaaa 39436803  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 44549284 - 44549234
Alignment:
Q  147 gaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    ||||||| |||||||||||| |||||  |||||||||||||||| ||||||    
T  44549284 gaaagtcgcaaatatttatacttataattttaatcaaaattaaaatttcat 44549234  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 33490701 - 33490753
Alignment:
Q  145 ttgaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    |||||| |||||||||||||||||||||| |||||||||||||||| ||||||    
T  33490701 ttgaaaatcacaaatatttatatttatatttttaatcaaaattaaaatttcat 33490753  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 11172086 - 11171995
Alignment:
Q  17 caagcagagaagttaaatatttcttttcaataatctatatgatattaaaatgaaaagtcgaagttatttaaggttttgattctttgtctttt 108  Q
    |||| ||||||  ||||||||||||||||||||||||| |||||| ||||| | ||||  |  ||||| || |||||| |||||||| ||||    
T  11172086 caagaagagaaactaaatatttcttttcaataatctatctgatatgaaaattagaagtaaagattattgaaagttttggttctttgtttttt 11171995  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 21970178 - 21970228
Alignment:
Q  147 gaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    |||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  21970178 gaaagtcacaaacatttatatttatatttttaatcaaaattaaaatttcat 21970228  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 21992614 - 21992664
Alignment:
Q  147 gaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    |||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  21992614 gaaagtcacaaacatttatatttatatttttaatcaaaattaaaatttcat 21992664  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 44909926 - 44910008
Alignment:
Q  42 ttcaataatctatatgatattaaaatgaaaagtcgaagttatttaaggttttgattctttgtcttttgaaaacaacaactcat 124  Q
    ||||||||||||| | |||| ||||||||||||| || ||||||||  |||||||| ||||||||| | || ||| |||||||    
T  44909926 ttcaataatctatctcatatgaaaatgaaaagtcaaaattatttaaaattttgattatttgtctttcgcaagcaataactcat 44910008  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 22152391 - 22152444
Alignment:
Q  144 tttgaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    ||||||||| ||||| |||||||||| ||| |||||||||||||||| ||||||    
T  22152391 tttgaaagtaacaaacatttatatttttatttttaatcaaaattaaaatttcat 22152444  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 25995216 - 25995174
Alignment:
Q  144 tttgaaagtcacaaatatttatatttatatctttaatcaaaat 186  Q
    ||||||||| | |||||||||||||||||| ||||||||||||    
T  25995216 tttgaaagtaaaaaatatttatatttatatttttaatcaaaat 25995174  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 5846373 - 5846426
Alignment:
Q  144 tttgaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    ||||||||||||||||||||||| || ||  |||||||||||| ||| ||||||    
T  5846373 tttgaaagtcacaaatatttatacttgtaattttaatcaaaatcaaaatttcat 5846426  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 30805830 - 30805778
Alignment:
Q  144 tttgaaagtcacaaatatttatatttatatctttaatcaaaattaaactttca 196  Q
    ||||||||| ||||| |||||||||| ||  |||||||||||||||| |||||    
T  30805830 tttgaaagtaacaaacatttatatttttagttttaatcaaaattaaaatttca 30805778  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 1170635 - 1170687
Alignment:
Q  145 ttgaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    |||||||| |||||||||||||||||||| |||||||||||| ||| ||||||    
T  1170635 ttgaaagtaacaaatatttatatttatatttttaatcaaaataaaaatttcat 1170687  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 172
Target Start/End: Original strand, 15920182 - 15920210
Alignment:
Q  144 tttgaaagtcacaaatatttatatttata 172  Q
    |||||||||||||||||||||||||||||    
T  15920182 tttgaaagtcacaaatatttatatttata 15920210  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 8209365 - 8209322
Alignment:
Q  154 acaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||||    
T  8209365 acaaacatttatatttatatctttaatcaaaatcaaaatttcat 8209322  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 4353671 - 4353618
Alignment:
Q  144 tttgaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    |||||||||||||||||||||||  ||||  |||||| ||||||||| ||||||    
T  4353671 tttgaaagtcacaaatatttatacatataattttaataaaaattaaaatttcat 4353618  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 11409119 - 11409171
Alignment:
Q  144 tttgaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    ||||||||| ||||| |||||||||| || ||||||||||||||||| ||||||    
T  11409119 tttgaaagtaacaaacatttatattttta-ctttaatcaaaattaaaatttcat 11409171  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 48715805 - 48715753
Alignment:
Q  145 ttgaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    |||||||| ||||| |||||||||||||| ||||||| |||| ||| ||||||    
T  48715805 ttgaaagtaacaaacatttatatttatatttttaatccaaatcaaaatttcat 48715753  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 38801846 - 38801892
Alignment:
Q  144 tttgaaagtcacaaatatttatatttatatctttaatcaaaattaaa 190  Q
    |||||||||||  ||||||||||||||||| |||||| |||||||||    
T  38801846 tttgaaagtcattaatatttatatttatatttttaattaaaattaaa 38801892  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 360487 - 360524
Alignment:
Q  160 atttatatttatatctttaatcaaaattaaactttcat 197  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  360487 atttatatttatatttttaatcaaaattaaaatttcat 360524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 17372542 - 17372594
Alignment:
Q  145 ttgaaagtcacaaatatttatatttatatctttaatcaaaattaaactttcat 197  Q
    |||||||  |||||||||||||||| ||  |||||||||||||||| ||||||    
T  17372542 ttgaaagcaacaaatatttatatttttagttttaatcaaaattaaaatttcat 17372594  T

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