View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18129_low_8 (Length: 339)

Name: NF18129_low_8
Description: NF18129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18129_low_8
NF18129_low_8
[»] chr3 (20 HSPs)
chr3 (52-231)||(37742722-37742898)
chr3 (56-231)||(44380252-44380427)
chr3 (58-204)||(47426350-47426496)
chr3 (59-154)||(50934501-50934596)
chr3 (62-229)||(33509684-33509851)
chr3 (47-124)||(10179868-10179945)
chr3 (60-132)||(32319462-32319534)
chr3 (58-231)||(47186175-47186349)
chr3 (58-154)||(42664673-42664769)
chr3 (47-124)||(10018671-10018748)
chr3 (56-227)||(35094544-35094717)
chr3 (58-154)||(31187145-31187241)
chr3 (56-231)||(17466271-17466446)
chr3 (47-124)||(10123211-10123288)
chr3 (58-154)||(34029366-34029462)
chr3 (60-210)||(39498689-39498838)
chr3 (238-310)||(3267093-3267165)
chr3 (180-231)||(19619220-19619271)
chr3 (59-111)||(21963073-21963125)
chr3 (243-310)||(53081827-53081895)
[»] chr2 (13 HSPs)
chr2 (56-230)||(34392080-34392254)
chr2 (72-231)||(23863801-23863958)
chr2 (56-231)||(7381690-7381864)
chr2 (56-154)||(21603957-21604055)
chr2 (56-231)||(37357915-37358094)
chr2 (81-231)||(4779608-4779758)
chr2 (53-231)||(4775629-4775808)
chr2 (168-231)||(21606149-21606212)
chr2 (109-231)||(25275620-25275741)
chr2 (89-231)||(41095784-41095926)
chr2 (296-339)||(29483936-29483979)
chr2 (296-336)||(6747073-6747113)
chr2 (263-339)||(40832762-40832838)
[»] chr1 (15 HSPs)
chr1 (58-231)||(2569037-2569209)
chr1 (58-229)||(29119324-29119495)
chr1 (232-339)||(1606533-1606640)
chr1 (56-227)||(32676134-32676305)
chr1 (56-207)||(8462127-8462277)
chr1 (58-231)||(46435463-46435624)
chr1 (58-154)||(8809715-8809811)
chr1 (56-151)||(25161307-25161402)
chr1 (58-231)||(35998252-35998426)
chr1 (56-120)||(7214520-7214584)
chr1 (172-232)||(15387155-15387215)
chr1 (296-339)||(1776260-1776303)
chr1 (296-339)||(28521778-28521821)
chr1 (195-230)||(36771533-36771568)
chr1 (59-107)||(16679821-16679868)
[»] chr4 (19 HSPs)
chr4 (58-231)||(12473704-12473877)
chr4 (58-231)||(12528113-12528286)
chr4 (56-225)||(35869575-35869744)
chr4 (56-231)||(22343335-22343510)
chr4 (59-206)||(33249397-33249544)
chr4 (56-214)||(21260792-21260950)
chr4 (50-231)||(51811906-51812087)
chr4 (59-229)||(52910050-52910219)
chr4 (56-232)||(55590480-55590645)
chr4 (234-337)||(5657327-5657429)
chr4 (58-154)||(52012778-52012874)
chr4 (162-231)||(1796654-1796723)
chr4 (59-154)||(49999663-49999758)
chr4 (59-129)||(34829183-34829253)
chr4 (170-231)||(35781021-35781082)
chr4 (296-337)||(55719927-55719968)
chr4 (58-154)||(9799438-9799534)
chr4 (62-117)||(49998486-49998541)
chr4 (89-129)||(1796163-1796203)
[»] chr8 (9 HSPs)
chr8 (58-231)||(24337828-24338001)
chr8 (56-225)||(41179567-41179736)
chr8 (56-231)||(11254026-11254200)
chr8 (66-208)||(4708328-4708470)
chr8 (65-154)||(18168392-18168481)
chr8 (65-154)||(18631949-18632038)
chr8 (58-154)||(1514803-1514899)
chr8 (59-130)||(32825934-32826005)
chr8 (14-47)||(43340515-43340548)
[»] chr5 (16 HSPs)
chr5 (56-230)||(19357261-19357434)
chr5 (56-232)||(11607531-11607707)
chr5 (63-231)||(33858536-33858704)
chr5 (58-231)||(1826259-1826432)
chr5 (56-192)||(39570080-39570216)
chr5 (74-232)||(33271630-33271788)
chr5 (58-231)||(38010611-38010785)
chr5 (58-154)||(29989962-29990058)
chr5 (58-153)||(13086753-13086848)
chr5 (56-154)||(9827786-9827884)
chr5 (58-154)||(13015381-13015477)
chr5 (113-207)||(42148201-42148295)
chr5 (58-154)||(13478120-13478216)
chr5 (81-225)||(10292896-10293039)
chr5 (59-154)||(13421085-13421180)
chr5 (195-231)||(9827903-9827939)
[»] chr6 (8 HSPs)
chr6 (59-231)||(1211842-1212014)
chr6 (58-231)||(5403874-5404047)
chr6 (56-232)||(32644835-32645009)
chr6 (53-123)||(11753162-11753232)
chr6 (58-154)||(34245567-34245663)
chr6 (187-231)||(10503257-10503301)
chr6 (59-129)||(11113557-11113627)
chr6 (162-213)||(26526385-26526436)
[»] scaffold0229 (1 HSPs)
scaffold0229 (59-231)||(13003-13176)
[»] chr7 (11 HSPs)
chr7 (56-231)||(35341534-35341709)
chr7 (58-231)||(48250154-48250329)
chr7 (56-232)||(48072387-48072561)
chr7 (82-231)||(32694568-32694717)
chr7 (62-151)||(31306951-31307041)
chr7 (296-339)||(46269047-46269088)
chr7 (162-213)||(40856949-40857000)
chr7 (296-337)||(38364813-38364853)
chr7 (58-154)||(40893116-40893213)
chr7 (296-337)||(41970025-41970066)
chr7 (296-336)||(22616978-22617018)
[»] scaffold0519 (1 HSPs)
scaffold0519 (56-231)||(11193-11367)
[»] scaffold0032 (1 HSPs)
scaffold0032 (56-232)||(34192-34366)
[»] scaffold0263 (2 HSPs)
scaffold0263 (59-107)||(23094-23142)
scaffold0263 (88-154)||(23174-23240)
[»] scaffold0041 (1 HSPs)
scaffold0041 (58-154)||(73071-73168)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 52 - 231
Target Start/End: Original strand, 37742722 - 37742898
Alignment:
Q  52 cgggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgat 151  Q
    |||||||||||||||||   |||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  37742722 cgggttccacttgtgta---ttaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgat 37742818  T
Q  152 atannnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||       |||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  37742819 atatttttttaaagagtgtgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctatcc 37742898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 44380252 - 44380427
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||| |||||| |||| |||  |||  ||||||||||||||||||     
T  44380252 ttccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatatac 44380351  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| |||||    
T  44380352 ttttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtgttatcc 44380427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 47426350 - 47426496
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannn 157  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||| ||||||||  |||   |||||||||||||||||       
T  47426350 ccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatattt 47426449  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtata 204  Q
        |||||||||||||| ||| ||||| ||||||  ||||||||||    
T  47426450 ttttaaagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 50934501 - 50934596
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||  |||  ||||| ||||||||||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatata 50934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 229
Target Start/End: Original strand, 33509684 - 33509851
Alignment:
Q  62 ttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnn 161  Q
    ||||||||||||||||||  ||| ||||||| ||||| |||||||||||||||||||||||||| |||  |||   |||||||||||||| ||           
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtattttttt 33509783  T
Q  162 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctat 229  Q
    ||||| |||||||| ||||||||| |||||  |||||| |||||||||||||  ||||||||||||||    
T  33509784 aaaggatgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtgctat 33509851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 10179945 - 10179868
Alignment:
Q  47 tattgcgggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaa 124  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  10179945 tattgcggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 32319534 - 32319462
Alignment:
Q  60 acttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatat 132  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatggtatat 32319462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 47186175 - 47186349
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata-nn 156  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||||||| |||||||||||  |||  ||| ||||||||||||||       
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 47186274  T
Q  157 nnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
         |||| ||||||||| |||||||   ||||||   |||| |||||| ||| ||| ||||||||||||||||    
T  47186275 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 47186349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 42664673 - 42664769
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||| ||| | |||||| ||||| ||||| |||||||||||| |||||||||||| |||  |||| |||||||||||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 10018748 - 10018671
Alignment:
Q  47 tattgcgggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaa 124  Q
    |||||||| |||||||||||||||||||| ||| ||||| ||||||||||||| |||| | |||||||||||||||||    
T  10018748 tattgcggattccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 35094544 - 35094717
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaatta--gagtgtgccacctaccaatgttatattaccaatgctttatttgatat 153  Q
    ||||||||  |||||||||| ||| || ||||||||||||||| | |||||  |||| ||||||||||||||||||  |||  |||  ||||||||||||    
T  35094544 ttccacttcagtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatat 35094643  T
Q  154 annnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgct 227  Q
    |       ||||| |||| |||||| |||||| |||||| |||||| || ||||||||||| ||||||| ||||    
T  35094644 atttttttaaaggatgtgtcacgtgacacattctaattggacaatgatacataccattatggtacacaaatgct 35094717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 31187241 - 31187145
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||| ||||||||||||||| ||||| |||||| ||||| ||||| |||||||||||| |||||||||||  |||  |||| |||||||||||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 17466271 - 17466446
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    ||||| |||||||| ||| |  || |||||||||||| |||||| ||||||||||||| |||||| ||||||||  |||  |||| |||| ||||||||     
T  17466271 ttccatttgtgtacgattcaaatatcaatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgatatat 17466370  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||||| ||||||||  |||| | ||| ||| |||||||||||||||||| | ||||||| || |||||    
T  17466371 ttttttaaagggtatgccacgtaccacaatctaactgagcaatggtatataccattacggtacacaaatgttatcc 17466446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 10123288 - 10123211
Alignment:
Q  47 tattgcgggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaa 124  Q
    |||||||| |||||||||||||||||||| ||| ||||| |||||| || ||| |||| | |||||||||||||||||    
T  10123288 tattgcggattccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 34029462 - 34029366
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||||| ||||||||||||| ||||| |||||| |||||  |||| |||||||||||| ||| |||||||  |||  |||| |||||||||||||    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 39498838 - 39498689
Alignment:
Q  60 acttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnn 159  Q
    |||||||||||||||| ||| ||||| ||||||  ||||| |||||| |||||| |||||| | ||||||| |||  |||  ||||||| |||||         
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatata-attt 39498740  T
Q  160 nnaaagggtgtgccacgtggcacattataattgaacaatggtatataccat 210  Q
      ||||| ||||||||||| |||||| ||||||| |||| |||||||||||    
T  39498739 ttaaaggatgtgccacgtgacacattctaattgagcaatagtatataccat 39498689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 3267165 - 3267093
Alignment:
Q  238 tgttgtgttttgataaaattggccttattttatcgttgaaatgtcgaaactacccacagtgttgtatttgtgt 310  Q
    ||||||| ||||| ||||||| || || ||||| ||||||||||| |||||| |||  |||||||||||||||    
T  3267165 tgttgtgatttgacaaaattgcccctaatttatggttgaaatgtctaaactatccatggtgttgtatttgtgt 3267093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 19619220 - 19619271
Alignment:
Q  180 cacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||||| ||||||  |||||||||||||||||||| |||||| |||||||||    
T  19619220 cacattttaattgggcaatggtatataccattatggtacacatgtgctatcc 19619271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 21963125 - 21963073
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtg 111  Q
    ||||| ||||||||||||||| ||||| |||||| ||||| ||||| ||||||    
T  21963125 cacttatgtaccattaaggtatcaatgttatataacattgaccaataagagtg 21963073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 53081895 - 53081827
Alignment:
Q  243 tgttttgataaaattggcc-ttattttatcgttgaaatgtcgaaactacccacagtgttgtatttgtgt 310  Q
    |||||||| ||||||| || ||||||||  ||||||||||| | ||||||||  |||||||||||||||    
T  53081895 tgttttgacaaaattgccccttattttaatgttgaaatgtcaatactacccatggtgttgtatttgtgt 53081827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 56 - 230
Target Start/End: Complemental strand, 34392254 - 34392080
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||  |||  ||||||||||||||||||     
T  34392254 ttccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatat 34392155  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatc 230  Q
          |||||||||||||| ||||||| | |||||| ||||||||||||||||||||| |||||||||||||||    
T  34392154 ttttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctatc 34392080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 72 - 231
Target Start/End: Complemental strand, 23863958 - 23863801
Alignment:
Q  72 ttaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtg 171  Q
    |||||||| |||||||||||   ||||| |||||||||||||||||||||||||||||  |||  ||||||||||||||||||       ||||||||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtg 23863861  T
Q  172 ccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||| ||||||||| |||||| |||||| |||||| ||||||| ||||| ||||||||||    
T  23863860 ccacatggcacattctaattggacaatgatatatatcattatggtacactagtgctatcc 23863801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 7381690 - 7381864
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||  |||  ||| ||||||||||||||     
T  7381690 ttccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatata- 7381788  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||| |||| || ||| |||||| ||||||  |||| ||||||||||||||  ||| ||||| ||||||    
T  7381789 ttttttaaaggatgtgtcatgtgacacattttaattgggcaatagtatataccattatagtacgcaagttctatcc 7381864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 21603957 - 21604055
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||  |||||||||||||||  |||  |||| |||||||||||||    
T  21603957 ttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 231
Target Start/End: Complemental strand, 37358094 - 37357915
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgata--- 152  Q
    ||||||||||||| |||||||||| ||||| |||||||||||| | |||||||||||| |||||| ||||||||  |||  |||||||||||| |||       
T  37358094 ttccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatattt 37357995  T
Q  153 -tannnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
     |        |||   ||||||||||| |||||| |||||| |||||||||||||| |||||| ||||||||||||||||    
T  37357994 ttttttttttaaactatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctatcc 37357915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 81 - 231
Target Start/End: Original strand, 4779608 - 4779758
Alignment:
Q  81 caatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggc 180  Q
    |||| |||||||||||||  || ||| |||||||| |||| ||||||||  |||  ||| ||||||||||||||       ||||| |||| |||||| |    
T  4779608 caatagtatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatatatttttttaaaggatgtgtcacgtgac 4779707  T
Q  181 acattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||| |||||    
T  4779708 acattctaattggacaatggtatataccattatgatacacaagtgttatcc 4779758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 231
Target Start/End: Original strand, 4775629 - 4775808
Alignment:
Q  53 gggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaat-gctttatttgat 151  Q
    |||| |||||| |||||||||||| || ||||| ||||||  |||||||||||||| |||  || |||||||| |||  |||  ||| | ||||||| ||    
T  4775629 gggtaccacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaat 4775728  T
Q  152 atannnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||       ||||| |||||||| ||||||| | |||||| ||||||||||||||||||||| ||||||| || |||||    
T  4775729 atatttttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaaatgttatcc 4775808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 21606149 - 21606212
Alignment:
Q  168 tgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||| |||| |||||||||||    
T  21606149 tgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagtgctatcc 21606212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 25275741 - 25275620
Alignment:
Q  109 gtgtgccacctaccaatgtta-tattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatatac 207  Q
    |||||||||||| |||||||| | |||  ||| ||||||||||||||       ||||| |||||||||||  ||||| |||||| |||||| |||||||    
T  25275741 gtgtgccacctatcaatgttactttta--aatactttatttgatatacttttttaaaggatgtgccacgtgatacattctaattggacaatgatatatac 25275644  T
Q  208 cattatgttacacaagtgctatcc 231  Q
    ||||||| |||| |||||||||||    
T  25275643 cattatgatacagaagtgctatcc 25275620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 41095926 - 41095784
Alignment:
Q  89 tataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggcacattata 188  Q
    ||||| ||||| |||||||||||  ||||||||||||||||  |||  |||||||||||||||| |       ||| ||| |||||| |||||||   ||    
T  41095926 tatacaattggtcaattagagtgcaccacctaccaatgttactttataaatgctttatttgatagatttttttaaaaggtatgccacatggcacacccta 41095827  T
Q  189 attgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    | ||  |||||||||||||||||||| |||  |||||||||||    
T  41095826 aatggccaatggtatataccattatggtacctaagtgctatcc 41095784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 29483936 - 29483979
Alignment:
Q  296 gtgttgtatttgtgtttaaatttatgtgtttgtttatcatttct 339  Q
    ||||||||||||||| |||| || ||||||||||||||||||||    
T  29483936 gtgttgtatttgtgtctaaagttttgtgtttgtttatcatttct 29483979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 6747073 - 6747113
Alignment:
Q  296 gtgttgtatttgtgtttaaatttatgtgtttgtttatcatt 336  Q
    |||||||||||||||  |||||| |||||||||||||||||    
T  6747073 gtgttgtatttgtgtcaaaatttgtgtgtttgtttatcatt 6747113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 339
Target Start/End: Complemental strand, 40832838 - 40832762
Alignment:
Q  263 tattttatcgttgaaatgtcgaaactacccacagtgttgtatttgtgtttaaatttatgtgtttgtttatcatttct 339  Q
    |||||||| | ||||||||| ||||||||||  || ||||||||||||  ||  |||||||||  ||||||||||||    
T  40832838 tattttatggatgaaatgtcaaaactacccatggtattgtatttgtgtccaatattatgtgttcatttatcatttct 40832762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 2569037 - 2569209
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannn 157  Q
    |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata-tt 2569135  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        ||||||||||||| |||||||||| |||||   |||| ||||||| ||||||||||||||||||||||||    
T  2569136 ttttaaagggtgtgccatgtggcacattctaattaggcaatagtatatatcattatgttacacaagtgctatcc 2569209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 29119495 - 29119324
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannn 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||   |||||||||||||||||       
T  29119495 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatattt 29119396  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctat 229  Q
        |||||||||||||| ||||||||| ||||||  |||| ||||||||| ||||| ||||||| ||||||    
T  29119395 ttttaaagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtacacaaatgctat 29119324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 1606640 - 1606533
Alignment:
Q  232 agaggatgttgtgttttgataaaattggccttattttatcgttgaaatgtcgaaactacccacagtgttgtatttgtgtttaaatttatgtgtttgttta 331  Q
    |||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  1606640 agaggaggttgtgttttgacaaaattagccttattttatcgttgaaatgtcgaaactatccacagtgttgtatttgtgtccaaatttatgtgtttgttta 1606541  T
Q  332 tcatttct 339  Q
    ||||||||    
T  1606540 tcatttct 1606533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 32676134 - 32676305
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||  |||  ||||||||||||||||||     
T  32676134 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatat 32676233  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgct 227  Q
          ||||  |||||||| ||||||| | |||||| ||||||||||||||||||||  ||||||| ||||    
T  32676234 ttttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaaatgct 32676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 8462127 - 8462277
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||||||||  ||||| ||| |||||||||||| |||||  |||||| ||||||||||||||||||||||| |||  |||| ||||||| |||||     
T  8462127 ttccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatatac 8462225  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatatac 207  Q
          |||||| |||||||||| |||||| |||||| ||||||||||||||    
T  8462226 ttttttaaagggcgtgccacgtgacacattttaattggacaatggtatatac 8462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 46435624 - 46435463
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannn 157  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | |||||       |||||      |||||||||||||||||       
T  46435624 ccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcacct-------ttata-----gatgctttatttgatatatat 46435537  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        |||||||||| ||| || |||||| ||||||  |||||||||||||||||||| ||||||||| ||||||    
T  46435536 ttttaaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtcctatcc 46435463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 8809811 - 8809715
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| |||||||||||| |||||||||||  |||  |||| |||||||||||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 25161307 - 25161402
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgat 151  Q
    |||||||||||||||||||| ||  |||||||||||||||||| ||||||| ||||||||||||| ||||||||  |||  |||| ||||||||||    
T  25161307 ttccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 35998252 - 35998426
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata-nn 156  Q
    |||||||| ||||||||||||| ||||| |||||| |||||   ||| |||||||||||| || ||||||||| |||  | || ||||||| |||||       
T  35998252 ccacttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatatatgt 35998351  T
Q  157 nnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
         |||| ||||||||| ||||||||  ||||||   |||| |||||| ||| ||| |||||| |||||||||    
T  35998352 tttttaaagtgtgtgccacatggcacatcttaattggctaatgttatataacataatggtacacaggtgctatcc 35998426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 7214584 - 7214520
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccaccta 120  Q
    ||||| ||||||||||||||||||  ||| |||||||  ||||| ||||||||||||| ||||||    
T  7214584 ttccatttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcaccta 7214520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 15387215 - 15387155
Alignment:
Q  172 ccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 232  Q
    ||||||| |||||| ||||||||||||  |||||||||||||| |||| ||||| ||||||    
T  15387215 ccacgtgacacattttaattgaacaatattatataccattatggtacataagtgttatcca 15387155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 1776260 - 1776303
Alignment:
Q  296 gtgttgtatttgtgtttaaatttatgtgtttgtttatcatttct 339  Q
    |||||||||||||||  ||| |||||||||||||||||||||||    
T  1776260 gtgttgtatttgtgtccaaaattatgtgtttgtttatcatttct 1776303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 28521821 - 28521778
Alignment:
Q  296 gtgttgtatttgtgtttaaatttatgtgtttgtttatcatttct 339  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||    
T  28521821 gtgttgtatttgtgtctaaaattatgtgtttatttatcatttct 28521778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 36771533 - 36771568
Alignment:
Q  195 caatggtatataccattatgttacacaagtgctatc 230  Q
    ||||||||||||||||||| ||||||||||||||||    
T  36771533 caatggtatataccattatattacacaagtgctatc 36771568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 16679868 - 16679821
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattag 107  Q
    ||||||||||||||||||||| ||||| ||||||| ||| |||||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatatactatt-gccaattag 16679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 12473704 - 12473877
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannn 157  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||   |||||||||||||||||       
T  12473704 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatattt 12473803  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        |||||||||| ||| || |||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  12473804 ttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatcc 12473877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 12528113 - 12528286
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannn 157  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||   |||||||||||||||||       
T  12528113 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatattt 12528212  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        |||||||||| ||| || |||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  12528213 ttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatcc 12528286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 225
Target Start/End: Complemental strand, 35869744 - 35869575
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||||   ||  |||| |||||||||||||     
T  35869744 ttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatatac 35869645  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtg 225  Q
          ||||||||||||||||| |||||| |||||||||||||||||||||||||||| || |||||||    
T  35869644 ttttttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 22343335 - 22343510
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| || ||| ||||||||  |||  ||||||||||||||||||     
T  22343335 ttccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatat 22343434  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||| |||||||| || |||||| ||||||||||||| |||||||||||||| |||||| ||| |||||    
T  22343435 tattttaaaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacacaggtgatatcc 22343510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 33249544 - 33249397
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnn 158  Q
    |||||||||||||||||||||  |||||||||||| ||||||||||||||||||| |||||||||||||||  |||  ||||||||||||||||||        
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatatatt 33249445  T
Q  159 nnnaaagggtgtgccacgtggcacattataattgaacaatggtatata 206  Q
       |||||||||||||| ||||||| | ||||||| ||||| ||||||    
T  33249444 tttaaagggtgtgccacatggcacaatctaattgagcaatgatatata 33249397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 214
Target Start/End: Original strand, 21260792 - 21260950
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||| | ||||||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||  |||  |||| |||||||||||||     
T  21260792 ttccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatat 21260891  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatg 214  Q
          |||||||||||||| ||||||||| ||||||   |||| ||||||||||||||    
T  21260892 ttttttaaagggtgtgccacatggcacattctaattgggtaatgttatataccattatg 21260950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 51811906 - 51812087
Alignment:
Q  50 tgcgggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttg 149  Q
    ||||| ||||||| |||||||||||||||| ||| | ||||||  |||||||||||||||| ||||||||||||||||||  |||  |||  ||| ||||    
T  51811906 tgcggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttg 51812005  T
Q  150 atatannnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||||       ||||||||||||| ||| |||||| |||||| | ||||||||||||||||||| || ||||||| |||||    
T  51812006 atatatttttttaaagggtgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtgttatcc 51812087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 52910219 - 52910050
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnn 158  Q
    |||||||||||||| | |||| ||||| |||||||||||||||||||| |||||||||||||||||| |||  |||  |||||||||||||||| |        
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata-aaaaa 52910121  T
Q  159 nnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctat 229  Q
       ||| ||| ||||||||||||||   ||||||| |||||||||||||||| ||| |||| |||||||||    
T  52910120 attaaaaggtatgccacgtggcacaccctaattgatcaatggtatataccataatggtacataagtgctat 52910050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 55590480 - 55590645
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| |||||||||||| |||||  |||||| |||||| |||||||||||||||           ||||||||||||||     
T  55590480 ttccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgtta-----------ctttatttgatatac 55590568  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 232  Q
          ||||| ||||||||||| |||||| ||||||  |||||| ||||||||||||| ||| |||||||||||||    
T  55590569 ttttttaaaggatgtgccacgtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctatcca 55590645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 5657429 - 5657327
Alignment:
Q  234 aggatgttgtgttttgataaaattggccttattttatcgttgaaatgtcgaaactacccacagtgttgtatttgtgtttaaatttatgtgtttgtttatc 333  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||  | |||| ||||||||||||||    
T  5657429 aggaggttgtgttttgacaaaattggccttattttattgttgaaatgtcgaaactaccc-tggtgttgtatttgtgtccacatttgtgtgtttgtttatc 5657331  T
Q  334 attt 337  Q
    ||||    
T  5657330 attt 5657327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 52012778 - 52012874
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| | |||||||||| |||||||||||  |||  |||| |||||||||||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 1796654 - 1796723
Alignment:
Q  162 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    ||||| |||| ||||||||||| | |||||| ||||||||||||||||||||| |||||||||| |||||    
T  1796654 aaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtgttatcc 1796723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 49999758 - 49999663
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||||||||||| ||| ||  |||| ||| |  |||||| ||||||||||||| ||| |||||||||||| |||  ||||||||||||||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatata 49999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 34829253 - 34829183
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgtta 129  Q
    ||||| ||||| ||||||||| ||||| |||||| || |||||||||| |||||| |||||||||||||||    
T  34829253 cacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgtta 34829183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 35781021 - 35781082
Alignment:
Q  170 tgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||||||||||||||| ||||||  |||||||||||||||||||| ||| |||||| |||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtatataccattatggtacgcaagtgatatcc 35781082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 55719968 - 55719927
Alignment:
Q  296 gtgttgtatttgtgtttaaatttatgtgtttgtttatcattt 337  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  55719968 gtgttgtatttgtgtctaaatttatgtgtttgtttatcattt 55719927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 9799534 - 9799438
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||||| ||||||||||||| ||||| |||||| ||||| ||||  ||| |||||||| |||||||||||  |||  |||| ||||||| |||||    
T  9799534 ccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatata 9799438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  62 ttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccac 117  Q
    |||||||||||||||||| ||||  |||||| |||||||||||||| |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 1796163 - 1796203
Alignment:
Q  89 tataccattggccaattagagtgtgccacctaccaatgtta 129  Q
    |||||||||||||||||| | ||||||||||| ||||||||    
T  1796163 tataccattggccaattatattgtgccacctatcaatgtta 1796203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 24338001 - 24337828
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannn 157  Q
    |||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||| ||||||||||||  |||   |||||||||||||||||       
T  24338001 ccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatatat 24337902  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        |||||||||||||| | ||||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  24337901 ttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctatcc 24337828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 225
Target Start/End: Complemental strand, 41179736 - 41179567
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||||||| |||||| |||||||| ||||||  |||  |||| ||||||| |||||     
T  41179736 ttccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatat 41179637  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtg 225  Q
          || || |||||||| ||||||||| ||||||  |||||||||||||||||||| ||||||||||    
T  41179636 ttttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 231
Target Start/End: Complemental strand, 11254200 - 11254026
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    ||||||||||||||||||||  || ||||| |||||| ||||| ||| ||| ||| | ||||||||||||||||  |||  |||| |||||||||||||     
T  11254200 ttccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatac 11254102  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||||||||||||||| |||||| ||| ||| |||||||||||||||||||| ||||||| ||||||||    
T  11254101 atttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatcc 11254026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 4708470 - 4708328
Alignment:
Q  66 gtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaag 165  Q
    |||||| ||||||| |||||| ||||| |||  |||||||| |||||| |||||||||||||||  |||  |||| |||||||||||||       ||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatatatttttaaag 4708371  T
Q  166 ggtgtgccacgtggcacattataattgaacaatggtatatacc 208  Q
    |||||||||||||||||||| |||||   ||||||||| ||||    
T  4708370 ggtgtgccacgtggcacattctaattaggcaatggtatttacc 4708328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 18168392 - 18168481
Alignment:
Q  65 tgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    ||||||||||||||| |||||||||||| |||||  |||||||||||| |||||||||||| |||  |||  ||| ||||||||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 18631949 - 18632038
Alignment:
Q  65 tgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    ||||||||||||||| |||||||||||| |||||  |||||||||||| |||||||||||| |||  |||  ||| ||||||||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18632038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 1514803 - 1514899
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||| ||||| |||||| |||||  |||| ||||||| |||| |||||||||||  |||  |||| |||||||||||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 32826005 - 32825934
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttat 130  Q
    ||||||||||||||||| ||| ||||| | |||||||||||||||||||||| || ||| || |||||||||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttat 32825934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 43340548 - 43340515
Alignment:
Q  14 catcaaacaaacagcatacaacttgtctccacat 47  Q
    ||||||||||||||||||||||||||||||||||    
T  43340548 catcaaacaaacagcatacaacttgtctccacat 43340515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 230
Target Start/End: Complemental strand, 19357434 - 19357261
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  |||  ||||||||||||||||||     
T  19357434 ttccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata- 19357336  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatc 230  Q
          ||||| ||| ||||||| |||||| |||||| |||||| |||||||||||||| |||||||||||||||    
T  19357335 ttttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtgctatc 19357261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 11607707 - 11607531
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||  |||  |||| |||||||||||||     
T  11607707 ttccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatatac 11607608  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 232  Q
          ||||||||||||||| | |||||| |||||| ||||||||||||| ||||||| |||||||||||||||||    
T  11607607 ttttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtgctatcca 11607531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 33858704 - 33858536
Alignment:
Q  63 tgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 162  Q
    ||||||||||||||||| |||| ||||||| ||||| ||||||| ||||||||||||||||||||||  |||  |||| |||||||||||||       |    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatactttttta 33858605  T
Q  163 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||||||||||||||| |||||| ||||||  |||||||||||||||||||| ||||||||||||||||    
T  33858604 aagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctatcc 33858536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 1826259 - 1826432
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannn 157  Q
    |||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| ||||||||||| |||  ||    |||||||||||||||||       
T  1826259 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatatattt 1826358  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        ||||  |||||||| ||||||||| ||||||||||||| |||||| ||||||| |||||||||| |||||    
T  1826359 ttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtgatatcc 1826432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 39570216 - 39570080
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||  |||  |||| |||||||||||||     
T  39570216 ttccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatac 39570117  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattg 192  Q
          |||||||||||||| || || ||| ||||||    
T  39570116 ttttttaaagggtgtgccacctgacatattctaattg 39570080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 74 - 232
Target Start/End: Original strand, 33271630 - 33271788
Alignment:
Q  74 aaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgcc 173  Q
    |||||| ||||| |||||| |||||||||||||||||||| || ||| ||||||||  | |  ||||||||||||||||||       ||||| || |||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatatttttttaaaggatgcgcc 33271729  T
Q  174 acgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 232  Q
    |||||||||||| ||||||  |||| ||||||||||||||| |||| ||||||||||||    
T  33271730 acgtggcacattctaattgggcaatagtatataccattatggtacataagtgctatcca 33271788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 38010785 - 38010611
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata-nn 156  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||||||| |||||||||||  |||  ||| ||||||||||||||       
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 38010686  T
Q  157 nnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
         |||| ||||||||| |||||||   ||||||   |||| |||||| ||| ||| ||||||||||||||||    
T  38010685 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 38010611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 29989962 - 29990058
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| |||||||||||| |||||||||||  |||  |||| |||||||||||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 13086753 - 13086848
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatat 153  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| |||||||||||| |||||||||||| |||  |||  ||||||||||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgatat 13086848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 9827786 - 9827884
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||||| |||||||||||||| || | |||||||||||| |||||||||||| |||  |||  |||  |||||||||||||    
T  9827786 ttccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 13015381 - 13015477
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| |||||||||||| |||||||||||  |||  |||  |||||||||||||    
T  13015381 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatata 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 42148201 - 42148295
Alignment:
Q  113 gccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatatac 207  Q
    |||||||||||||||||  |||  |||| |||||||||||||       ||||||||| |||||| ||||||| |||||||||||||||||||||    
T  42148201 gccacctaccaatgttactttataaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtatatac 42148295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 13478216 - 13478120
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||| | ||||| |||||| ||||| ||||| |||||||||||| ||||| |||||  |||  |||  |||||||||||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 10292896 - 10293039
Alignment:
Q  81 caatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggc 180  Q
    ||||| |||||| ||||||||||| ||| |||||||| ||| |||||||| ||   | || ||||||||||||        |||||||||||||||||||    
T  10292896 caatgttatataacattggccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttgatat-tttttttaaagggtgtgccacgtggc 10292994  T
Q  181 acattataattgaacaatggtatataccattatgttacacaagtg 225  Q
    |||   ||||||  ||||| |||||| ||||||| ||||||||||    
T  10292995 acaccttaattggccaatgttatataacattatggtacacaagtg 10293039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 13421180 - 13421085
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    ||||||||||||||||||||| ||||| |||||| |||||  |||| |||||||  ||  || ||||||||  |||  |||||||||||| |||||    
T  13421180 cacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaatata 13421085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 9827903 - 9827939
Alignment:
Q  195 caatggtatataccattatgttacacaagtgctatcc 231  Q
    |||||||||||||||||||| |||||||||| |||||    
T  9827903 caatggtatataccattatggtacacaagtgttatcc 9827939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 1212014 - 1211842
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnn 158  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||  ||||||||  ||| | |||||||||||||||||        
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatatttt 1211915  T
Q  159 nnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
       |||||||||||||||||||||||| |||| |  |||||||||||||||||||| |||||||||| |||||    
T  1211914 tttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgatatcc 1211842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 5404047 - 5403874
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannn 157  Q
    ||||||||||||||||||||||  |||||||||||  ||||| || ||||||| ||||||||||||||||||  |||   ||| |||||||||||||       
T  5404047 ccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatattt 5403948  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        |||||| ||  ||| || |||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  5403947 ttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctatcc 5403874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 32645009 - 32644835
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||| |||||||||||||| || | || ||||||| |||||||||||||  ||||| ||||||| |||||||  |||  ||| ||||||||| ||||     
T  32645009 ttccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttactttaa-aatactttatttgttatat 32644911  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 232  Q
          |||||||||||||| ||  ||| | |||||||||||||||||||||||||||| |||||||||||||||||    
T  32644910 ttttttaaagggtgtgccacatgatacaatctaattgaacaatggtatataccattatg-tacacaagtgctatcca 32644835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 11753162 - 11753232
Alignment:
Q  53 gggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctacca 123  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||    
T  11753162 gggtaccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 34245567 - 34245663
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    ||||||||||||||||||||||  |||| |||||| ||||| ||||| | |||||||||| |||||||||||  |||  ||| ||||||||||||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 10503301 - 10503257
Alignment:
Q  187 taattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||    
T  10503301 taattggacaatggtatataccattatggtacacaagtgctatcc 10503257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 11113557 - 11113627
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgtta 129  Q
    ||||||||||||||||||||| ||||| |||||| ||||| | ||| |||||||| ||| ||| |||||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgtta 11113627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 26526436 - 26526385
Alignment:
Q  162 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattat 213  Q
    |||||||||| |||||| |||||| |||||||||||| ||| ||||||||||    
T  26526436 aaagggtgtgtcacgtgacacattctaattgaacaatagtagataccattat 26526385  T

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Target: scaffold0229 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 13176 - 13003
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnn 158  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||  ||||||||  ||| | |||||||||||||||||        
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatatttt 13077  T
Q  159 nnnaaaggg-tgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
       |||||| |||||||||||||||||| |||| |  |||||||||||||||||||| ||||||||||||||||    
T  13076 tttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctatcc 13003  T

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Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 35341534 - 35341709
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||  |||  |||| |||||||||||||     
T  35341534 ttccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatac 35341633  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||||||||||||||| |||||| |||||| |||||| |||||| ||||||| || | ||||| |||||    
T  35341634 ttttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatggtagataagtgttatcc 35341709  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 48250154 - 48250329
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannn 157  Q
    |||||||||||||||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||  |||   ||||||||||||||||        
T  48250154 ccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatattttt 48250253  T
Q  158 nnnnaaagggtgtgc--cacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        ||||||| |||  || ||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  48250254 ttttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctatcc 48250329  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 48072387 - 48072561
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||||||||| ||||||||| |||| |||||  ||||||  ||||||||||||||||| |  ||||||||| |||  |||  |||||||||| ||     
T  48072387 ttccacttgtgtactattaaggtaccaatagtata--ccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtat 48072484  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 232  Q
          |||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||||||||||||    
T  48072485 ttttttaaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctatcca 48072561  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 32694717 - 32694568
Alignment:
Q  82 aatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggca 181  Q
    |||| |||||||||||||  ||||||||||| ||| ||| ||||||||  |||  ||| ||||||||||||||       ||||||||||||||||| ||    
T  32694717 aatgatatataccattggtaaattagagtgtcccatctatcaatgttactttataaattctttatttgatatatttttttaaagggtgtgccacgtgaca 32694618  T
Q  182 cattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||| |||||   |||||||||||||||||||  ||||||||||||||||    
T  32694617 cattctaattaggcaatggtatataccattatagtacacaagtgctatcc 32694568  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 31307041 - 31306951
Alignment:
Q  62 ttgtgtaccattaaggtaacaatggtatataccattggccaatt-agagtgtgccacctaccaatgttatattaccaatgctttatttgat 151  Q
    |||||||||||||| ||| ||||| |||||| ||||| |||||| | ||||||| ||||||||||||||  |||  |||||||||||||||    
T  31307041 ttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 46269088 - 46269047
Alignment:
Q  296 gtgttgtatttgtgtttaaatttatgtgtttgtttatcatttct 339  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  46269088 gtgttgtatttgtgtttaaatt--tgtgtttgtttatcatttct 46269047  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 40856949 - 40857000
Alignment:
Q  162 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattat 213  Q
    |||||||||||||| || |||||| |||||| |||||| |||||||||||||    
T  40856949 aaagggtgtgccacatgacacattctaattggacaatgatatataccattat 40857000  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 38364813 - 38364853
Alignment:
Q  296 gtgttgtatttgtgtttaaatttatgtgtttgtttatcattt 337  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  38364813 gtgttgtatttgtgtctaaattt-tgtgtttgtttatcattt 38364853  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 40893213 - 40893116
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgc-tttatttgatata 154  Q
    |||||||| |||||| || |||  |||||||||||||||||| |||||||| |||  || ||| ||||||||  |||  ||||| |||||||||||||    
T  40893213 ccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 40893116  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 41970066 - 41970025
Alignment:
Q  296 gtgttgtatttgtgtttaaatttatgtgtttgtttatcattt 337  Q
    ||||||||||||||| |||| || ||||||||||||||||||    
T  41970066 gtgttgtatttgtgtctaaagttttgtgtttgtttatcattt 41970025  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 22616978 - 22617018
Alignment:
Q  296 gtgttgtatttgtgtttaaatttatgtgtttgtttatcatt 336  Q
    ||||||||||||||| |||| || |||||||||||||||||    
T  22616978 gtgttgtatttgtgtctaaagttttgtgtttgtttatcatt 22617018  T

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Target: scaffold0519 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 11193 - 11367
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    ||||||||||||||||||||  || ||||| |||||| ||||| ||| ||| ||| | ||||||||||||||||  |||  |||| |||||||||||||     
T  11193 ttccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatac 11291  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||||||||||||||| |||||| ||| ||| |||||||||||||||||||| ||||||| ||||||||    
T  11292 atttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatcc 11367  T

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Target: scaffold0032 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 34192 - 34366
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||| ||||||| |||  |||  |||  |||||||||||||     
T  34192 ttccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata- 34290  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 232  Q
          |||||||||| |||||| |||||| |||||| | |||| |||||||| ||||| ||||||| |||||||||    
T  34291 ttttttaaagggtgtgtcacgtgacacattctaattggataatgttatatacc-ttatggtacacaaatgctatcca 34366  T

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Target: scaffold0263 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 23094 - 23142
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattag 107  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  23094 cacttgtgtatcattaaggtaccaatggtatatactattggccaattag 23142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 23240 - 23174
Alignment:
Q  88 atataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 154  Q
    ||||| |||||||||||||||||||||||||||||||| |||  |||  |||  |||||||||||||    
T  23240 atatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatata 23174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 73071 - 73168
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgc-tttatttgatata 154  Q
    |||||||| |||||| || |||  |||||||||||||||||| |||||||| |||  || ||| ||||||||  |||  ||||| |||||||||||||    
T  73071 ccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 73168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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