View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18130_high_10 (Length: 270)
Name: NF18130_high_10
Description: NF18130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18130_high_10 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 41387313 - 41387069
Alignment:
| Q |
20 |
atcacaaaacaatattgatttgttcaaattttgctacattgctataactattatttaacaaacaccgaagagaaaacagaaaagatacatagccaaatcg |
119 |
Q |
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| T |
41387313 |
atcacaaaacaatattgatttgttcaaatttcgctacattgctataactattatttaacaaacaccgaagagaaaacagaaaagatacatagccaaatcg |
41387214 |
T |
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| Q |
120 |
cttcttcaggaaaaattgtgaaactagaatcacatttgtactttaccttaaccattcctgttccattatcacagaccagtggctgaatatcctccgcgtc |
219 |
Q |
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| T |
41387213 |
cttcttcaggaaaaattgtgaaactagaatcacatttgtactttaccttaaccattcctgttccattatcacagaccagtggctgaatatcctcggcgtc |
41387114 |
T |
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| Q |
220 |
tgccattgtctttcaaaatctgcacaaaccatacatttcttctca |
264 |
Q |
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| T |
41387113 |
tgccattgtctttcaaaatctgcacaaaccatacattccttctca |
41387069 |
T |
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Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 66451 - 66388
Alignment:
| Q |
163 |
taccttaaccattcctgttccattatcacagaccagtggctgaatatcctccgcgtctgccatt |
226 |
Q |
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| T |
66451 |
taccttaaccattccagttccattatcacaaacaagaggttgaatatcctcagcatctgccatt |
66388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 8688093 - 8688026
Alignment:
| Q |
163 |
taccttaaccattcctgttccattatcacagaccagtggctgaatatcctccgcgtctgccattgtct |
230 |
Q |
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| T |
8688093 |
taccttaaccattccagttccattgtcacaaacaagaggttgaatatcctcagcgtctgccatcgtct |
8688026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 60453 - 60515
Alignment:
| Q |
163 |
taccttaaccattcctgttccattatcacagaccagtggctgaatatcctccgcgtctgccat |
225 |
Q |
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| T |
60453 |
taccttgaccattccagttccattgtcacaaacaagaggttgaatatcctcagcgtctgccat |
60515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 2722236 - 2722277
Alignment:
| Q |
18 |
gtatcacaaaacaatattgatttgttcaaattttgctacatt |
59 |
Q |
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| T |
2722236 |
gtatcacataacaatattcatttgtttaaattttgctacatt |
2722277 |
T |
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