View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18130_high_4 (Length: 528)
Name: NF18130_high_4
Description: NF18130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18130_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 34452247 - 34451976
Alignment:
| Q |
1 |
aatgagatatatgaagtttattactattggcaacatgcaactgattagaacaagtgttatcattcttgatgaagagattatttaagccatttataatatg |
100 |
Q |
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| T |
34452247 |
aatgagatatatgaagtttattactattggcaacatgcaactgattagaacaagtgttatcattcttgatgaagagattatttaagccatttgtaatatg |
34452148 |
T |
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| Q |
101 |
gtgagatgcttcagaatcaaagagccattccgaaggaggagtactgatttggacaacatttgcagtggattgtggtgacttacacagataccttttgagc |
200 |
Q |
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| T |
34452147 |
gtgagatgcttcagaatcaaagagccattccgaaggaggagtactgatttggacaacattcgcagtggattgtggtgacttacacagattcctcttgagc |
34452048 |
T |
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| Q |
201 |
ttgtaacattgcatagcattatgacctcctgttacaatatatttcaaaagtttcaaatatatcatgcctcat |
272 |
Q |
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| T |
34452047 |
ttgtaacattgcatagcattatgacctcctgttacaatatatttcaaaagtttcaaatatatcatgcctcat |
34451976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 344 - 514
Target Start/End: Complemental strand, 34451893 - 34451723
Alignment:
| Q |
344 |
ctactaatattactctcatcttattttaaattagtccaagccattatattttataatttcaaaagtatcaaatcagtttaattaaatatgatacattgtt |
443 |
Q |
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| T |
34451893 |
ctactaatattactctcatcttattttaaattagtacaagccattatattttataatttcaaaagtatcaaagcagtttaattaaatatgaaacattgtt |
34451794 |
T |
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| Q |
444 |
atccttttccacagtagtacacatggttaccttagtgcttcacttatttgctctcgtacaaaagaaaaata |
514 |
Q |
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| T |
34451793 |
atccttttccacagtagtacacatggttaacttagtgcttcacttatttgctctcgtacagaagaaaaata |
34451723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 34470577 - 34470529
Alignment:
| Q |
180 |
ttacacagataccttttgagcttgtaacattgcatagcattatgacctc |
228 |
Q |
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||||| |||| | ||||||||||||||||||||||| |||| ||||||| |
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| T |
34470577 |
ttacatagattctttttgagcttgtaacattgcatatcattgtgacctc |
34470529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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