View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18130_high_5 (Length: 500)
Name: NF18130_high_5
Description: NF18130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18130_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 482
Target Start/End: Complemental strand, 38543674 - 38543203
Alignment:
| Q |
11 |
aagcataggaagaatgaaacacagaaatttagtagggttgagaggttggtgcaaaaaagataaaggaaacttgattctagtgtacgacttcatgaataat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38543674 |
aagcataggaagaatgaaacacagaaatttagtagggttgagaggttggtgcaaaaaagataaaggaaacttgattctagtgtacgacttcatgaataat |
38543575 |
T |
|
| Q |
111 |
ggaagtttggacaaatggatatttgagtgtgaaaaaggaaagatgctaacatgggaagagaggattcaagttttgaaaagcgtagccgcggggattcttt |
210 |
Q |
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| T |
38543574 |
ggaagtttggacaaatggatatttgagtgtgaaaaaggaaagatgctaacatgggaagagaggattcaagttttgaaaagcgtagccgcggggattcttt |
38543475 |
T |
|
| Q |
211 |
acctgcatgaaggttgggaagttaaggtcttgcatagggatatcaaagcaaacaatgttctacttgacaaggacatgaatgctagattgggggattttgg |
310 |
Q |
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| T |
38543474 |
acctgcatgaaggttgggaagttaaggtcttgcatagggatatcaaagcaaacaatgttctacttgacaaggacatgaatgctagattgggggattttgg |
38543375 |
T |
|
| Q |
311 |
tttggctcttatgcatgagcatcatggacaagttgccaacacaacaaaagtattagggacattaggatacattgctccggaagtgattcgaacaggaaaa |
410 |
Q |
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| T |
38543374 |
tttggctcttatgcatgagcatcatggacaagttgccaacacaacaaaagtattagggacattaggatacattgctccggaagtgattcgaacaggaaaa |
38543275 |
T |
|
| Q |
411 |
gcatcgactatgtctgatgtgtttggctttggaatattggtgttggaagttatttgtgggcgaagacctatt |
482 |
Q |
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| T |
38543274 |
gcatcgactatgtctgatgtgtttggctttggaatattggtgttggaagtaatctgcgggcgaagacctatt |
38543203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 482
Target Start/End: Original strand, 38353136 - 38353607
Alignment:
| Q |
11 |
aagcataggaagaatgaaacacagaaatttagtagggttgagaggttggtgcaaaaaagataaaggaaacttgattctagtgtacgacttcatgaataat |
110 |
Q |
| |
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|||| |||||||| ||||||| |||||||||||||| || |||||||||||||| |||| || ||||||||||||||||| || |||||||||| |||| |
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| T |
38353136 |
aagcctaggaagactgaaacatagaaatttagtaggattcagaggttggtgcaaggaagaaaagggaaacttgattctagtttatgacttcatgactaat |
38353235 |
T |
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| Q |
111 |
ggaagtttggacaaatggatatttgagtgtgaaaaaggaaagatgctaacatgggaagagaggattcaagttttgaaaagcgtagccgcggggattcttt |
210 |
Q |
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|||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| | |
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| T |
38353236 |
ggaagtttagacaaatggatctttgagtgtgaagaaggaaagatgctaacatgggaagagaggattcaagttttgaaaaatgtagccacagggattctat |
38353335 |
T |
|
| Q |
211 |
acctgcatgaaggttgggaagttaaggtcttgcatagggatatcaaagcaaacaatgttctacttgacaaggacatgaatgctagattgggggattttgg |
310 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38353336 |
acctgcatgaaggttgggaagtcaaggttttgcatagggatatcaaagcaagcaatgttctacttgacaaggatatgaatgctagattgggggattttgg |
38353435 |
T |
|
| Q |
311 |
tttggctcttatgcatgagcatcatggacaagttgccaacacaacaaaagtattagggacattaggatacattgctccggaagtgattcgaacaggaaaa |
410 |
Q |
| |
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||||||||| |||||||||||||| |||||||| |||| ||||||||||||| | || |||||||||||||||||||| ||||||||||||||||||| | |
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| T |
38353436 |
tttggctctcatgcatgagcatcacggacaagtggccagcacaacaaaagtactcggaacattaggatacattgctccagaagtgattcgaacaggaaga |
38353535 |
T |
|
| Q |
411 |
gcatcgactatgtctgatgtgtttggctttggaatattggtgttggaagttatttgtgggcgaagacctatt |
482 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
38353536 |
gcatcaactatgtctgatgtgtttgggtttggaatattggtgttggaagtgatttgcggccgaagacctatt |
38353607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 311
Target Start/End: Complemental strand, 38547169 - 38547074
Alignment:
| Q |
216 |
catgaaggttgggaagttaaggtcttgcatagggatatcaaagcaaacaatgttctacttgacaaggacatgaatgctagattgggggattttggt |
311 |
Q |
| |
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|||||||||||||| || |||| |||||||| ||||| ||||||| ||||| ||||||| ||| || |||||||| ||| | || ||||||||| |
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| T |
38547169 |
catgaaggttgggattttgaggttttgcatagagatattaaagcaagtaatgtgctacttggcaaagatatgaatgcaagaattggtgattttggt |
38547074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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