View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18130_low_11 (Length: 343)
Name: NF18130_low_11
Description: NF18130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18130_low_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 112 - 343
Target Start/End: Original strand, 43906713 - 43906944
Alignment:
| Q |
112 |
cacatattatataaggttaacgttcattcttattttcagcctatttttcattttcacctcaacatagcaattaacatcctcattaatttggatcctgttt |
211 |
Q |
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| T |
43906713 |
cacatattatataaggttaacgttcattcttattttcagcctatttttcattttcacctttacatagcaattaacatcctcattaatttggatcctgttt |
43906812 |
T |
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| Q |
212 |
caatacaattctttctcagagtgaaaatgtttcaaggattgttgaaaccaaaaagttatacaaaatggtaaacactaaacacagccaatggtttttcttt |
311 |
Q |
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| T |
43906813 |
caatacaattctttctcagagtgaaaatgtttcaaggattgttgaaaccaaaaagttatacaaaatggtaaacactaaacacagccaatggtttttcttt |
43906912 |
T |
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| Q |
312 |
ttcaccttgtcttcattctatttatttatgat |
343 |
Q |
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| T |
43906913 |
ttcaccttttcttcattctgtttttttatgat |
43906944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 43906601 - 43906653
Alignment:
| Q |
14 |
atcatatcctaatcttcctctctaagttttctcattcctcattataaaaccat |
66 |
Q |
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| T |
43906601 |
atcatatcctaatcttcctctctaagttttctcattcctcattataaaaccat |
43906653 |
T |
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