View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18130_low_13 (Length: 332)
Name: NF18130_low_13
Description: NF18130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18130_low_13 |
 | |
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| [»] chr4 (10 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 4841816 - 4841485
Alignment:
| Q |
1 |
ggatctttctcaaaacaagttaattggagcaatcccaaagttgagtagttttaaatatctaaggttcttgtatttgcaacagaatgatctctctggatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4841816 |
ggatctttctcaaaacaagttaattggagcaatcccaaagttgagtagttttaaatatctaaggttcttgtatttgcaacagaatgatctctctggatca |
4841717 |
T |
|
| Q |
101 |
aagcaatctgaactctctgaaggctcaaaactacaacttctagatttgagggagaacaaactttcaggtaaaattcccaattggatggataagctctcag |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4841716 |
aagccatctgaactctctgaaggctcaaaactacaacttctagatttgagggagaacaaactttcaggtaaaattcccaattggatggataagctctcag |
4841617 |
T |
|
| Q |
201 |
agttaagggttcttctattaggagggaacaattttgaaggagaaattccaattcaattgtgtcatctaaaaaatatcaccataatggacttatcacgaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
4841616 |
agttaagggttcttctattaggagggaacaattttgaaggagaaattccaattcaattgtgtcatctaaaaaatatcaccataatggacttatcacggaa |
4841517 |
T |
|
| Q |
301 |
catgctcaatgcttcaataccatcttgcttcc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4841516 |
catgctcaatgcttcaataccatcttgcttcc |
4841485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 5183038 - 5183368
Alignment:
| Q |
1 |
ggatctttctcaaaacaagttaattggagcaatcccaaagttgagtagttttaaatatctaaggttcttgtatttgcaacagaatgatctctctggatca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||||||| |||||||| | || |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5183038 |
ggatctttctcaaaacaagttaaatggatcgatcccaaagttcagtagtttgacatctctaaggttcttgtatttgcaatagaatgatctctctggatca |
5183137 |
T |
|
| Q |
101 |
aagcaatctgaactctctgaaggctcaaaactacaacttctagatttgagggagaacaaactttcaggtaaaattcccaattggatggataagctctcag |
200 |
Q |
| |
|
| | |||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5183138 |
ataccatctgaactctctgaaggctcacaactacaacttctagatttaagggacaacaaattttcaggtaaaattcccaattggatggataagctctcag |
5183237 |
T |
|
| Q |
201 |
agttaagggttcttctattaggagggaacaattttgaaggagaaattccaattcaattgtgt-catctaaaaaatatcaccataatggacttatcacgaa |
299 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| |||| |||||||||||||||||| | |
|
|
| T |
5183238 |
agttaagggtccttctattaggagggaacaattttgaaggagatattccaattcaattgtgtccttctaaaaaagatcaacataatggacttatcacgga |
5183337 |
T |
|
| Q |
300 |
acatgctcaatgcttcaataccatcttgctt |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5183338 |
acatgctcaatgcttcaataccatcttgctt |
5183368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 5173706 - 5174030
Alignment:
| Q |
1 |
ggatctttctcaaaacaagttaattggagcaatcccaaagttgagtagttttaaatatctaaggttcttgtatttgcaacagaatgatctctctggatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | || | | | ||| || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
5173706 |
ggatctttctcaaaacaagttaattggagcaatcccaaagttcac-agctgga--tctctgagattcttgtatttacaacagaatgatctctctggattt |
5173802 |
T |
|
| Q |
101 |
aagcaatctgaactctctgaaggctcaaaactacaacttctagatttgagggagaacaaactttcaggtaaaattcccaattggatggataagctctcag |
200 |
Q |
| |
|
| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5173803 |
ataccatttgaactctctgaaggctcaaaactacaacttctagatttgagggagaacaaactttcaggtaaaattcccaactggatggataagctctcag |
5173902 |
T |
|
| Q |
201 |
agttaagggttcttctattaggagggaacaattttgaaggagaaattccaattcaattgtgtcatctaaaaaatatcaccataatggacttatcacgaaa |
300 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||| ||||||||| ||||||| || |
|
|
| T |
5173903 |
agttgagggttcttttattaggagggaacaattttgaaggagaaattccaattcaattttgttggttcaaaaagatcgacataatggatctatcacggaa |
5174002 |
T |
|
| Q |
301 |
catgctcaatgcttcaataccatcttgc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
5174003 |
catgctcaatgcttcaataccatcttgc |
5174030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 4856313 - 4855982
Alignment:
| Q |
1 |
ggatctttctcaaaacaagttaattggagcaatcccaaagttgagtagttttaaatatctaaggttcttgtatttgcaacagaatgatctctctggatca |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||| |||| | | ||| |||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
4856313 |
ggatctttctcaaaacaagttagttggagcaatcccaaagttaagtggtttgacagttcttaggttcttgtatttgcaaaagaataatctccctggatca |
4856214 |
T |
|
| Q |
101 |
aagcaatctgaactctctgaaggctcaaaactacaacttctagatttgagggagaacaaactttcaggtaaaattcccaattggatggataagctctcag |
200 |
Q |
| |
|
| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| || |||| |
|
|
| T |
4856213 |
ataccatctgaactctctaaaggctcacaactacaacttctagatttgagggagaacaaattttcaggtaaaattccccactggatggataacctatcag |
4856114 |
T |
|
| Q |
201 |
agttaagggttcttctattaggagggaacaattttgaaggagaaattccaattcaattgtgtcatctaaaaaatatcaccataatggacttatcacgaaa |
300 |
Q |
| |
|
||||| | |||||| || ||||||||||||| || |||||||| ||||||||||||||||||| ||||||| ||| |||||||||| ||||||| || |
|
|
| T |
4856113 |
agttacgtgttcttttactaggagggaacaacttggaaggagatattccaattcaattgtgtcggttaaaaaagatcgacataatggacctatcacggaa |
4856014 |
T |
|
| Q |
301 |
catgctcaatgcttcaataccatcttgcttcc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4856013 |
catgctcaatgcttcaataccatcttgcttcc |
4855982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 5214601 - 5214932
Alignment:
| Q |
1 |
ggatctttctcaaaacaagttaattggagcaatcccaaagttgagtagttttaaatatctaaggttcttgtatttgcaacagaatgatctctctggatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||| |||| | | ||| |||||||||||||||||| ||||| |||||||||| || |
|
|
| T |
5214601 |
ggatctttctcaaaacaagttaattggatcaatcccaaagttaagtggtttgacagttcttaggttcttgtatttgcaaaagaataatctctctggctcg |
5214700 |
T |
|
| Q |
101 |
aagcaatctgaactctctgaaggctcaaaactacaacttctagatttgagggagaacaaactttcaggtaaaattcccaattggatggataagctctcag |
200 |
Q |
| |
|
| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
5214701 |
ataccatctgaactctctgaaggctcacaactacaacttctagatttgagggagaacaaattttcaggtaaaattccccactggatggataagctatcag |
5214800 |
T |
|
| Q |
201 |
agttaagggttcttctattaggagggaacaattttgaaggagaaattccaattcaattgtgtcatctaaaaaatatcaccataatggacttatcacgaaa |
300 |
Q |
| |
|
||||| | |||||| || ||||||||||||| || |||||||| ||||||||||||||||||| ||||||| || |||||||||| ||||||| || |
|
|
| T |
5214801 |
agttacgtgttcttttactaggagggaacaaattggaaggagatattccaattcaattgtgtcggttaaaaaagatagacataatggacctatcacggaa |
5214900 |
T |
|
| Q |
301 |
catgctcaatgcttcaataccatcttgcttcc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5214901 |
catgctcaatgcttcaataccatcttgcttcc |
5214932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 332
Target Start/End: Original strand, 7142944 - 7143274
Alignment:
| Q |
2 |
gatctttctcaaaacaagttaattggagcaatcccaaagttgagtagttttaaatatctaaggttcttgtatttgcaacagaatgatctctctggatcaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | || |||||||| ||| |||||||| |||||||||||||| ||||||||||||||||||| | |
|
|
| T |
7142944 |
gatctttctcaaaacaagttaattggatcaatcccagatttaagtagtttgaaaaatctaaggctcttgtatttgcaaaagaatgatctctctggatcta |
7143043 |
T |
|
| Q |
102 |
agcaatctgaactctctgaaggctcaaaactacaacttctagatttgagggagaacaaactttcaggtaaaattcccaattggatggataagctctcaga |
201 |
Q |
| |
|
| || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
7143044 |
taccatttgaactctctgaaggctcacaactacaacttttagatttgagggagaacaaactttcaagtaaaattcccaactggatggataagctatcaga |
7143143 |
T |
|
| Q |
202 |
gttaagggttcttctattaggagggaacaattttgaaggagaaattccaattcaattgtgtcatctaaaaaatatcaccataatggacttatcacgaaac |
301 |
Q |
| |
|
|||| | |||||| |||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||| ||| || ||| ||| ||||| |||| |
|
|
| T |
7143144 |
gttacgtgttcttttattaggaaggaacaatttggaaggagatattccaattcaattgtgtcggttaaaaaagatcgacaaaatagacctatcagaaaac |
7143243 |
T |
|
| Q |
302 |
atgctcaatgcttcaataccatcttgcttcc |
332 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
|
|
| T |
7143244 |
atgctcaatgcttcaataccaccttgcttcc |
7143274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 2 - 330
Target Start/End: Original strand, 5196445 - 5196773
Alignment:
| Q |
2 |
gatctttctcaaaacaagttaattggagcaatcccaaagttgagtagttttaaatatctaaggttcttgtatttgcaacagaatgatctctctggatcaa |
101 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| || ||| |||| | |||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
5196445 |
gatctttctcaaaacaagttaaatggatcaatcccacctttaagtggtttgactcttctaaggttcttgtatttgcaagagaatggtctctctggatcaa |
5196544 |
T |
|
| Q |
102 |
agcaatctgaactctctgaaggctcaaaactacaacttctagatttgagggagaacaaactttcaggtaaaattcccaattggatggataagctctcaga |
201 |
Q |
| |
|
| || |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
5196545 |
tcccatatgaactctatgaaggcttccaactacaacttctagatttgagggagaacaaattttcaggaaaaattcccaactggatggataagttctcaga |
5196644 |
T |
|
| Q |
202 |
gttaagggttcttctattaggagggaacaattttgaaggagaaattccaattcaattgtgtcatctaaaaaatatcaccataatggacttatcacgaaac |
301 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
5196645 |
attaagggtccttttattaggagggaacaattttgaaggagaaattccaatgcagttgtgtcggttaaaaaagatcaacataatggacttatcacgaaac |
5196744 |
T |
|
| Q |
302 |
atgctcaatgcttcaataccatcttgctt |
330 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
5196745 |
atgctcaatgcttccataccatcttgctt |
5196773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 5160796 - 5161128
Alignment:
| Q |
1 |
ggatctttct-caaaacaagttaattggagcaatcccaaagttgagtagttttaaatatctaaggttcttgtatttgcaacagaatgatctctctggatc |
99 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||||| || |||||||| | | ||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5160796 |
ggatctttcttcaaaacaagttaaatggatcaatcccacctttaagtagtttgacttctctaaagttcttgtatttgcaaaagaatgatctctctggatc |
5160895 |
T |
|
| Q |
100 |
aa-agcaatctgaactctctgaaggctcaaaactacaacttctagatttgagggagaacaaactttcaggtaaaattcccaattggatggataagctctc |
198 |
Q |
| |
|
| | |||| |||||| |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
5160896 |
tataccaat-tgaactgtctgaaagctcaaaactacaacttctggatttgagggagaacaaattttcaggtaaaattcccaattggattgataatctctc |
5160994 |
T |
|
| Q |
199 |
agagttaagggttcttctattaggagggaacaattttgaaggagaaattccaattcaattgtgtcatctaaaaaatatcaccataatggacttatcacga |
298 |
Q |
| |
|
|||||| | |||||| || ||||| |||| || || |||||||| ||||||||||||||||||| ||||||| |||| ||| |||||| |||| || |
|
|
| T |
5160995 |
agagttgcgtgttcttttactaggatggaataacttggaaggagatattccaattcaattgtgtcgattaaaaaagatcaacatgatggacctatcgcgg |
5161094 |
T |
|
| Q |
299 |
aacatgctcaatgcttcaataccatcttgcttcc |
332 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
5161095 |
aacatgttcaatgcttcaataccatcttgcttcc |
5161128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 5203489 - 5203530
Alignment:
| Q |
151 |
ggagaacaaactttcaggtaaaattcccaattggatggataa |
192 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
5203489 |
ggagaacaaattttcaggtaacattcccaactggatggataa |
5203530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 5203549 - 5203597
Alignment:
| Q |
268 |
aaaaaatatcaccataatggacttatcacgaaacatgctcaatgcttca |
316 |
Q |
| |
|
||||| ||||| ||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
5203549 |
aaaaattatcaacatgatggacctatcacggaacatgctcaatgcttca |
5203597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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