View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18130_low_24 (Length: 222)

Name: NF18130_low_24
Description: NF18130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18130_low_24
NF18130_low_24
[»] chr8 (3 HSPs)
chr8 (18-213)||(42312219-42312414)
chr8 (20-66)||(8333926-8333972)
chr8 (141-193)||(15580687-15580739)
[»] chr1 (2 HSPs)
chr1 (18-202)||(47247009-47247194)
chr1 (78-213)||(41326063-41326198)
[»] chr6 (5 HSPs)
chr6 (112-202)||(20909199-20909289)
chr6 (112-202)||(20923647-20923737)
chr6 (95-166)||(27445745-27445817)
chr6 (18-52)||(20909168-20909202)
chr6 (18-52)||(20923616-20923650)
[»] scaffold0003 (2 HSPs)
scaffold0003 (95-173)||(34871-34950)
scaffold0003 (95-166)||(41541-41613)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 42312219 - 42312414
Alignment:
Q  18 caaatgagatgatccaattgtattacttgcaatagcaacagtgaaacacaataacaaacatgtataatttcactcatagtatttcatccacatcatagaa 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||    
T  42312219 caaatgagatgatccacttgtattacttgcaatagcaacagtgaaacacaataacaaacatgtataatttcgctcatagtatttcatctacatcagagaa 42312318  T
Q  118 agtcaccttttatatttttgttgttttcctgcttcaatgaatgaacacccccagtttgtccagcaagagtgtcattgataatgctctgtgctgctc 213  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  42312319 agtcaccttttatatttttgttcttttcctgcttcaatgaatgaacacccccagtttgtccagcaagagtgtcattgataatgctttgtggtgctc 42312414  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 8333972 - 8333926
Alignment:
Q  20 aatgagatgatccaattgtattacttgcaatagcaacagtgaaacac 66  Q
    ||||||||||||||   ||||||||||||||||||||||||| ||||    
T  8333972 aatgagatgatccagccgtattacttgcaatagcaacagtgagacac 8333926  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 15580687 - 15580739
Alignment:
Q  141 ttttcctgcttcaatgaatgaacacccccagtttgtccagcaagagtgtcatt 193  Q
    ||||||||||| |||||| ||||| ||||||||  || |||||||||||||||    
T  15580687 ttttcctgctttaatgaaagaacaaccccagttaatctagcaagagtgtcatt 15580739  T

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Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 47247194 - 47247009
Alignment:
Q  18 caaatgagatgatccaattgtattacttgcaatagcaacagtgaaacacaataacaaacatgtataatttcactcatagtatttcatccacatcatagaa 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||    
T  47247194 caaatgagatgatccacttgtattacttgcaatagcaacagtgaaacacaataacaaacatgtataatttcgcttatagtatttcatctacatcatagaa 47247095  T
Q  118 agtcaccttttatatttttgttgttttcctgcttcaatgaatgaacacccccag-tttgtccagcaagagtgtcattgataatgct 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  47247094 agtcaccttttatatttttgttgttttcctgcttcaatgaatgaacaccccccgatttgtctagcaagagtgtcattgataatgct 47247009  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 41326063 - 41326198
Alignment:
Q  78 tgtataatttcactcatagtatttcatccacatcatagaaagtcaccttttatatttttgttgttttcctgcttcaatgaatgaacacccccagtttgtc 177  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  41326063 tgtataatttcgctcatagtttttcatctacatcatagaaagtcaccttttatttttttgttgttttcccgcttcaatgaatgaacacccccagtttgtc 41326162  T
Q  178 cagcaagagtgtcattgataatgctctgtgctgctc 213  Q
     |||||||||||||||||||||||| |||| |||||    
T  41326163 tagcaagagtgtcattgataatgctttgtggtgctc 41326198  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 20909199 - 20909289
Alignment:
Q  112 atagaaagtcaccttttatatttttgttgttttcctgcttcaatgaatgaacacccccagtttgtccagcaagagtgtcattgataatgct 202  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20909199 atagaaagtcaccttttatatttttgttgttttcccgcttcaatgaatgaacacccccagtttgtctagcaagagtgtcattgataatgct 20909289  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 20923647 - 20923737
Alignment:
Q  112 atagaaagtcaccttttatatttttgttgttttcctgcttcaatgaatgaacacccccagtttgtccagcaagagtgtcattgataatgct 202  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20923647 atagaaagtcaccttttatatttttgttgttttcccgcttcaatgaatgaacacccccagtttgtctagcaagagtgtcattgataatgct 20923737  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 27445817 - 27445745
Alignment:
Q  95 agtatttcatccacatcatagaaagtcaccttttatatt-tttgttgttttcctgcttcaatgaatgaacacc 166  Q
    ||||||||||  | |||||| |||||||||||| |||   ||||||||||||||||||||| |||||||||||    
T  27445817 agtatttcatatagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacacc 27445745  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 20909168 - 20909202
Alignment:
Q  18 caaatgagatgatccaattgtattacttgcaatag 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  20909168 caaatgagatgatccacttgtattacttgcaatag 20909202  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 20923616 - 20923650
Alignment:
Q  18 caaatgagatgatccaattgtattacttgcaatag 52  Q
    |||||||||||||||| ||||||||||||||||||    
T  20923616 caaatgagatgatccacttgtattacttgcaatag 20923650  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 34871 - 34950
Alignment:
Q  95 agtatttcatccacatcatagaaagtcaccttttatatt-tttgttgttttcctgcttcaatgaatgaacacccccagtt 173  Q
    ||||||||||  | |||||| |||||||||||| |||   |||||||||||| |||||||| ||||||||||||||||||    
T  34871 agtatttcatttagatcataaaaagtcacctttcatagcctttgttgttttcatgcttcaaggaatgaacacccccagtt 34950  T

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Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 41541 - 41613
Alignment:
Q  95 agtatttcatccacatcatagaaagtcaccttttatatt-tttgttgttttcctgcttcaatgaatgaacacc 166  Q
    ||||||||||  | |||||| |||||||||||| |||   ||||||||||||||||||||| |||||||||||    
T  41541 agtatttcatatagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacacc 41613  T

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