View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18130_low_26 (Length: 206)
Name: NF18130_low_26
Description: NF18130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18130_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 14161097 - 14161276
Alignment:
| Q |
4 |
tgtacgtaataagatgtatgaatactcaccacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttctaataacat |
103 |
Q |
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| T |
14161097 |
tgtatgtaataatatgtatgaatactcaccacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttctaataacat |
14161196 |
T |
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| Q |
104 |
gttgcatcttacagaaacattctcgcgtgaacaggttacgtcccccagaaatgaaggaaccgaaaaatgattgtgtgtgt |
183 |
Q |
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| T |
14161197 |
gtagcatcttacagaaacattctcgcgtgaacaggttgcgtcccccagaaatgaaagaaccggaaaatgattgtgtgtgt |
14161276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 21424247 - 21424426
Alignment:
| Q |
4 |
tgtacgtaataagatgtatgaatactcaccacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttctaataacat |
103 |
Q |
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| T |
21424247 |
tgtatgtaataatatgtatgaatactcaccacaaagttcctacaaccccaaaatttacttcctctattaggacccattttcgtcactgttctaataacat |
21424346 |
T |
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| Q |
104 |
gttgcatcttacagaaacattctcgcgtgaacaggttacgtcccccagaaatgaaggaaccgaaaaatgattgtgtgtgt |
183 |
Q |
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| T |
21424347 |
gtagcatcttacagaaacattctcgcgtgaacaggttgcgtcccccagaaatgaaagaaccgaaaaatgattgtgtgtgt |
21424426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 10026534 - 10026471
Alignment:
| Q |
31 |
accacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttc |
94 |
Q |
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| T |
10026534 |
accacacaattcctacaacaccaaaattttctttctctatagggacccatttttgtcactgttc |
10026471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 29706481 - 29706660
Alignment:
| Q |
4 |
tgtacgtaataagatgtatgaatactcaccacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttctaataacat |
103 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29706481 |
tgtatgtaataatatgtatgaatactcaccacaaagttcctacaaccccaaaattttcttcctctattaggacccattttcgtcactgttctaataacat |
29706580 |
T |
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| Q |
104 |
gttgcatcttacagaaacattctcgcgtgaacaggttacgtcccccagaaatgaaggaaccgaaaaatgattgtgtgtgt |
183 |
Q |
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| T |
29706581 |
gtagcatcttacagaaacattctcgcgtgaacaggttgcgtcccccagaaatgaaagaaccggaaaatgattgtgtgtgt |
29706660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 24868008 - 24867935
Alignment:
| Q |
17 |
atgtatgaatactcaccacaaagttcctacaaccccaaaatttccttcc---tctattaggacccattttcgtca |
88 |
Q |
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| T |
24868008 |
atgtatgaatacccaccacaaatttcct-caacaccaaaatttccttcctggtctattgggacccattttcgtca |
24867935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 21360851 - 21360788
Alignment:
| Q |
31 |
accacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttc |
94 |
Q |
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| T |
21360851 |
accacacaattcctacaacaccaaaattttctttctctatagggacccatttttgtcactgttc |
21360788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 5048783 - 5048720
Alignment:
| Q |
31 |
accacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttc |
94 |
Q |
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| T |
5048783 |
accacacaattcctacaacaccaaaattttctttctctatagggacccatttttgtcactgttc |
5048720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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