View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18130_low_3 (Length: 713)
Name: NF18130_low_3
Description: NF18130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18130_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 655; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 23 - 704
Target Start/End: Original strand, 44047422 - 44048106
Alignment:
| Q |
23 |
aaattttactctcttgtg---tcataatattattttctaacgttatgggctataaataaacgtatgtgtaaaacatttttacaagacagaagagtaatga |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44047422 |
aaattttactctcttgttgtctcataatattattttctaacgttatgggctataaataaacgtatgtgtaaaacatttttacaagacagaagagtaatga |
44047521 |
T |
|
| Q |
120 |
aattcttaatagtgttttcaatagaagaaactcgattttgagttcgaaccttgaggaagatgtcaacagctcgatagagtccatcgcttgtaacgcgagc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44047522 |
aattcttaatagtgttttcaatagaagaaactcgattttgagttctaaccttgaggaagatgtcaacagctcgatagagtccatcgcttgtaacgcgggc |
44047621 |
T |
|
| Q |
220 |
atgatccggaagtagttctgcaagtgctatgaattttgatggcaacaagtttgagtctagtgctacttcagcgagaaaattgtcaagtaatttggatacc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44047622 |
atgatccggaagtagttctgcaagtgctatgaattttgatggcaacaagtttgagtctagtgctacttcagcgagaaaattgtcaagtaatttggatacc |
44047721 |
T |
|
| Q |
320 |
ttaagaattgagctttgttttggagatccaggactgtcaaattcatactcgtacatcatttgattttcatctctgaagtcactgtcttcatcatccacct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44047722 |
ttaagaattgagctttgttttggagatccaggactgtcaaattcatactcgtacatcatttgattttcatctctgaagtcactgtcttcatcatccacct |
44047821 |
T |
|
| Q |
420 |
cgtccaaattcagaaaagtagaaaagatcctcaaaattgaatctatatcatacattgtgttgtgagcactcgaaggtgaattcgttggaataagtatgtc |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44047822 |
cgtccaaattcagaaaagtagaaaagatcctcaaaattgaatctatatcatacattgtgttgtgagcactcgaaggtgaattcgttggaataagtatgtc |
44047921 |
T |
|
| Q |
520 |
ttcaagaattgcctgatcgagttgtaaaccaattcgcctctccaaatcacttctacaagaagttgatactaatgttgctattgcagttttcaataaacat |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44047922 |
ttcaagaattgcctgatcgagttgtaaaccaattcgcctctccaaatcacttctacaagaagttgatactaatgttgctattgcagttttcaataaacat |
44048021 |
T |
|
| Q |
620 |
gaaagaaatgctattggaactgagcttttcctagattgagttggtagtaagcgaacaatagtttcaacaatgaccctttgcttct |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44048022 |
gaaagaaatgctattggaactgagcttttcctagattgagttggtagtaagcgaacaatagtttcaacaatgaccctttgtttct |
44048106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 167 - 366
Target Start/End: Complemental strand, 39824439 - 39824240
Alignment:
| Q |
167 |
accttgaggaagatgtcaacagctcgatagagtccatcgcttgtaacgcgagcatgatccggaagtagttctgcaagtgctatgaattttgatggcaaca |
266 |
Q |
| |
|
||||| |||||||| || || |||| |||||||||||||||| || || |||||||| ||||||| || ||||||| ||||| |||||||| | || |
|
|
| T |
39824439 |
accttaaggaagatatcgactgctctatagagtccatcgcttacaattcgcgcatgatcaggaagtaactcagcaagtgaaatgaactttgatggaagca |
39824340 |
T |
|
| Q |
267 |
agtttgagtctagtgctacttcagcgagaaaattgtcaagtaatttggataccttaagaattgagctttgttttggagatccaggactgtcaaattcata |
366 |
Q |
| |
|
|||||| ||||| ||||||||||| ||| | || || || ||||||||||||||||||||||||||||||||||| ||||| || || ||||| ||||| |
|
|
| T |
39824339 |
agtttgggtctaaagctacttcagcaagatagttatccagcaatttggataccttaagaattgagctttgttttggcgatcctgggctatcaaaatcata |
39824240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 503 - 704
Target Start/End: Complemental strand, 39824103 - 39823902
Alignment:
| Q |
503 |
gttggaataagtatgtcttcaagaattgcctgatcgagttgtaaaccaattcgcctctccaaatcacttctacaagaagttgatactaatgttgctattg |
602 |
Q |
| |
|
|||||||| || || |||||||||||||| || || ||||| | |||||| | |||||||||||| |||||||||||| |||||| ||| |||||||| |
|
|
| T |
39824103 |
gttggaatcagaatatcttcaagaattgcttggtcaagttgcagaccaatccttctctccaaatcagatctacaagaagtagatactgatgatgctattg |
39824004 |
T |
|
| Q |
603 |
cagttttcaataaacatgaaagaaatgctattggaa-ctgagcttttcctagattgagttggtagtaagcgaacaatagtttcaacaatgaccctttgct |
701 |
Q |
| |
|
||| |||||| |||| ||| ||||| |||||||||| |||| |||||||| ||||||||||||||||| | | || |||||||||| ||||||||| | |
|
|
| T |
39824003 |
cagatttcaacaaacttgagagaaaagctattggaatctga-cttttccttgattgagttggtagtaaactagttattgtttcaacaaggaccctttgtt |
39823905 |
T |
|
| Q |
702 |
tct |
704 |
Q |
| |
|
||| |
|
|
| T |
39823904 |
tct |
39823902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University