View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18130_low_4 (Length: 602)
Name: NF18130_low_4
Description: NF18130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18130_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 20 - 599
Target Start/End: Original strand, 30483774 - 30484349
Alignment:
| Q |
20 |
agaatagaatattttcataagtggaaaagaaatgattctcacgtattttaagtgtgatgttaaagcttctttaaaaatctagttattttggtttcacatt |
119 |
Q |
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| T |
30483774 |
agaatagaatatta-cataagtggaaaagaaatgattctcacgtattttaagtgtgatgttaaagcttctttaaaaatctagttattttggtttcacatt |
30483872 |
T |
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| Q |
120 |
tatttttgctaattagttcaaacttttgttgattacaggaagactgggttttgtgtagagtatttcataaaggcaagacagaaaataatgccaaattaag |
219 |
Q |
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| T |
30483873 |
tatttttgttaattagttcaaacttttgttgattacaggaagactgggttttgtgtagagtatttcataaaggcaagacagaaaataatgccaaattaag |
30483972 |
T |
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| Q |
220 |
tccacaagaaatgtatgagactatagtcccatccctaaccaaccaaaccatgccaattgggtataaccaatttgcttctttctcatcttcaatgacaacc |
319 |
Q |
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| T |
30483973 |
tccacaagaaatgtatgagactatagtcccatccctaaccaaccaaaccatgccaattgggtataaccaatttgcttcattctcatcttcaatgaca--- |
30484069 |
T |
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| Q |
320 |
acccatcattgtcatttaaatgagaaccaaaataattctttgatgaatcttcttcaattttctaaagaaacaaacaacaattgtagtagtgttactcaaa |
419 |
Q |
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| T |
30484070 |
acccatcattgtcatttaaatgagaaccaaaataattctttgatgaatcttcttcaattttctaaagaaacaaacaacaattgtagtagtgttactcaaa |
30484169 |
T |
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| Q |
420 |
ttagtcctaaatgtgatgatggatatggatatttgtgggacatggatttggaagatcatcatgatggtgtggcctcatcagacatggaaggaatgagatt |
519 |
Q |
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| T |
30484170 |
ttagtcctaaatgtgatgatggatatggatatttgtgggacatggatttggaagatcatcatgatggtgtggcctcatcagacatggaaggaatgagatt |
30484269 |
T |
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| Q |
520 |
cgaggttgataataatagcatggtcttgttataaaaagtatgatgatgtgtacatattatgtatatggttcttctctctc |
599 |
Q |
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| T |
30484270 |
ccaggttgataataatagcatggtcttgttataaaaagtatgatgatgtgtacatattatgtatatggttcttatctctc |
30484349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 474
Target Start/End: Complemental strand, 39014904 - 39014840
Alignment:
| Q |
410 |
gttactcaaattagtcctaaatgtgatgatggatatggatatttgtgggacatggatttggaaga |
474 |
Q |
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| T |
39014904 |
gttactcaaattagttccaaaggtgatgatggatatggattcttgtggaacatggatttggaaga |
39014840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 39015246 - 39015161
Alignment:
| Q |
110 |
gtttcacatttatttttgctaattagttcaaacttttgttgattacaggaagactgggttttgtgtagagtatttcataaaggcaa |
195 |
Q |
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| T |
39015246 |
gttttacatatatatttgttaattaggtcaaatttttgttgatcacaggaggactgggtattgtgtagagtctttcacaaaagcaa |
39015161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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