View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18130_low_5 (Length: 558)
Name: NF18130_low_5
Description: NF18130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18130_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 7 - 547
Target Start/End: Original strand, 37435638 - 37436172
Alignment:
| Q |
7 |
atgtcaacatcaacggtatttcatctcatattcaattctatgccaacttacgagtaactattttttagctaccaacatttattaaagggaatgcatcatt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37435638 |
atgttaacatcaacggtatttcatctcatattcaattctatgccaacttacgagtaactattttttagctaccaacatttattaaagggaatgcatcatt |
37435737 |
T |
|
| Q |
107 |
tgctcaataaatattttaaggttatctcataccaaaaggatggagagtgctaatatgggcgagagccattcatatggattctgaatattatccaaatcct |
206 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37435738 |
tgctcaata----ttttaaggttatctcataccaaaaggatggagagtgctaatatgggcgagagccattcatatggattctgaatattatccaaatcct |
37435833 |
T |
|
| Q |
207 |
aaagaatttaatccttctagatggaaagtaagttggattgatattttacnnnnnnnactcaagttatattattatctatctatttacgtttttaaatgta |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37435834 |
aaagaatttaatccttctagatggaaagtaagttggattgatattttactttttttactcaagttatattattatctatctatt--cgtttttaaatgta |
37435931 |
T |
|
| Q |
307 |
agtagataatattttttgaaacagttagctttaaatcatataagagtattattttaaatttaagcaatgtcattgtatgtgtaggattataatgccaagg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37435932 |
agtagataatattttttgaaacagttagctttaaatcatataagagtattattttaaatttaagcaatgtcattgtatgtgtaggattataatgccaagg |
37436031 |
T |
|
| Q |
407 |
caggaacctttcttccttttggagcaggaagtaggctctgtcctggagccgacttagcaaaacttgaaatttctatatttcttcattatttcctccttaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37436032 |
caggaacctttcttccttttggagcaggaagtaggctctgtcctggagccgacttagcaaaacttgaaatttctatatttcttcattatttcctccttaa |
37436131 |
T |
|
| Q |
507 |
ctacaggtcagcaccatcttctctttccttcaactcttcat |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37436132 |
ctacaggtcagcaccatcttctctttccttcaactcttcat |
37436172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 520
Target Start/End: Complemental strand, 11800075 - 11799964
Alignment:
| Q |
409 |
ggaacctttcttccttttggagcaggaagtaggctctgtcctg-gagccgacttagcaaaacttgaaatttctatatttcttcattatttcctccttaac |
507 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || ||||||| ||| ||||| ||||||| |||||||| | ||||||| ||||||||||| ||||| |
|
|
| T |
11800075 |
ggaacctttattccttttggagcaggaagtatgcattgtcctgcgagt-gacttggcaaaacctgaaatttttgtatttctacattatttccttcttaat |
11799977 |
T |
|
| Q |
508 |
tacaggtcagcac |
520 |
Q |
| |
|
|| |||| ||||| |
|
|
| T |
11799976 |
tataggtaagcac |
11799964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 500
Target Start/End: Complemental strand, 11815928 - 11815837
Alignment:
| Q |
409 |
ggaacctttcttccttttggagcaggaagtaggctctgtcctggagccgacttagcaaaacttgaaatttctatatttcttcattatttcct |
500 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| ||||||||| ||||| || ||| ||||||| || || ||||| ||||||||||| |
|
|
| T |
11815928 |
ggaacattccttccttttggagcaggaagtaggcactgtcctgggagtgacttggctaaaattgaaatatccatttttctacattatttcct |
11815837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University