View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18130_low_6 (Length: 539)
Name: NF18130_low_6
Description: NF18130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18130_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 22 - 524
Target Start/End: Complemental strand, 29296300 - 29295798
Alignment:
| Q |
22 |
aagcctccctccgtaatccattcccatcggaactactaccaccaacacgcgacttcttagaagaaaggccacacaaaagaagacgcattaaacaatccca |
121 |
Q |
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| T |
29296300 |
aagcctccctccgtaatccattcccatcggaactactaccaccaacacgcgacttcttagaagaaagaccacacaaaagaagacgcattaaacaatccca |
29296201 |
T |
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| Q |
122 |
aaagaaatcactcatcaacaacttcgaacttcaaccacacgtcacaaagattctccgatccaacgacttctcttctcttctcgaaacaatccaaatcttc |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29296200 |
aaagaaatcactcatcaacaacttcgaacttcaaccacatgtcacaaagattctccgatccaacgacttctcttctcttctcgaaacaatccaaatcttc |
29296101 |
T |
|
| Q |
222 |
atccaatccaaggatccttcattccaaaccgttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaaactc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29296100 |
atccaatccaaggatccttcattccaaaccgttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaaactc |
29296001 |
T |
|
| Q |
322 |
accctaaactcgagatccgaaacgaagctgtttcgattcttcttcacattttcaaaaaatctgataaatggaatcctagtatgcttaatcaactcaaaga |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29296000 |
accctaaactcgagatccgaaacgaagctgtttcgattcttcttcacattttcaaaaaatctgataaatggaatcctagtatgcttaatcaactcaaaga |
29295901 |
T |
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| Q |
422 |
acctcttcttaattcgctcaagaaagaatatagtgaatctctttttcaacctctctgtgaaacgatcggtctttgtgctgctagggtttatcagtatcca |
521 |
Q |
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| T |
29295900 |
acctcttattaattcgctcaagaaagaatatagtgaatctctttttcaacctctctgtgaaacgatcggtctttgtgctgctagggtttatcagtatcca |
29295801 |
T |
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| Q |
522 |
tat |
524 |
Q |
| |
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||| |
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| T |
29295800 |
tat |
29295798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 29333519 - 29333455
Alignment:
| Q |
253 |
ttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaa |
317 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||| || || || || ||||||||| |
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| T |
29333519 |
ttttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaa |
29333455 |
T |
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