View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18130_low_9 (Length: 406)
Name: NF18130_low_9
Description: NF18130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18130_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 2 - 397
Target Start/End: Complemental strand, 10750852 - 10750455
Alignment:
| Q |
2 |
catccttcatgatgtaaaccttaattccctatctttattttgtttaaaacctaatccatccaaagcctccctcattcacaattgaaaacaca--aataaa |
99 |
Q |
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| T |
10750852 |
catccttcatgatgtaaaccttaattccctatctttattttgtttaaaacctaatccatccaaagcctccctcattcacaattgaaaacacacaaataaa |
10750753 |
T |
|
| Q |
100 |
caaaccactttctctcccacttatttggcatactaagaaacacacgacaataatgtcttaccataatggtatgcatcataacaacaatgttgttgaagat |
199 |
Q |
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| T |
10750752 |
caaaccactttctctcccacttatttggcatgctaagaaacacacgacaataatgtcttaccataatggtatgcatcataacaacaatgttgttgaagat |
10750653 |
T |
|
| Q |
200 |
catgaaactctgacataccaaacctacccgtgtggatactatgttcaaagcccctccacagtctcccatgcaaatagcattgacaaacatagcaacatcc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10750652 |
catgaaactctgacataccaaacctacccgtgtggatactatgttcaaagcccctccacagtctcccatgcaaatagcattgacaaacatagcaacatcc |
10750553 |
T |
|
| Q |
300 |
aaaacgacgtcgaatcaactttccactccccgaatcgatctgagacccaccggacaaatccggcccacgaacaagaacccaaccgttttgccctttgc |
397 |
Q |
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|||||||| ||||||||||||||| |||||||| ||||| ||||||| | || |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10750552 |
aaaacgacaccgaatcaactttccattccccgaaccgatccgagacccttccgataaatccggtccacgaacaagaacccaaccgttttgccctttgc |
10750455 |
T |
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