View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_high_14 (Length: 330)
Name: NF18131_high_14
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 7885217 - 7885052
Alignment:
| Q |
19 |
ccattacacttctattgagagtatatgcttacaggtttatcatgaattcctagttgagcccaggtgaggtgatcacttctaatagttcttccaaggtgtc |
118 |
Q |
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| T |
7885217 |
ccattacacttctattgagagtatatgcttacaggtttatcatgaattcctagttgagcccaggtgaggtgatcacttctaatagttcttccaaggtgtc |
7885118 |
T |
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| Q |
119 |
atatccacctataagaataggaaaattattgttataaaaactgcaatgagataaaacgtacgtttt |
184 |
Q |
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| T |
7885117 |
atatccacctataagaataggaaaattattgttataaaaactgcaatgagataaaacgtacgtttt |
7885052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 181 - 322
Target Start/End: Complemental strand, 7884892 - 7884751
Alignment:
| Q |
181 |
ttttcttgagttaccatgttagagctacgaagagaaaaaagtaacctagcaaggcaataaaagcatcggcttgtcgagccatttcggccttgcattggtg |
280 |
Q |
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| T |
7884892 |
ttttcttgagttaccatgttagagctacgaagagaaaaaagtaacctggcaaggcaataaaagcatcggcctgtcgagccatttcggccttgcgttggtg |
7884793 |
T |
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| Q |
281 |
catgtccgatacagcccgaacttcacctacactctcccctat |
322 |
Q |
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| T |
7884792 |
catgtccgatacagcccgaacttcacctacactctcccctat |
7884751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 53033270 - 53033206
Alignment:
| Q |
231 |
aaggcaataaaagcatcggcttgtcgagccatttcggccttgcattggtgcatgtccgatacagc |
295 |
Q |
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| T |
53033270 |
aaggcaataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagc |
53033206 |
T |
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