View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18131_high_15 (Length: 321)

Name: NF18131_high_15
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18131_high_15
NF18131_high_15
[»] chr2 (1 HSPs)
chr2 (32-321)||(2782009-2782302)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 32 - 321
Target Start/End: Original strand, 2782009 - 2782302
Alignment:
Q  32 gtcatcaaacaaaccaagatatagtaaccaacttgtttgactccaagtcataaacaacta----gttttcttccctcacttggtcaactttatccacgta 127  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  2782009 gtcatcaaacaaaccaagacatagtaaccaacttgtttgactccaagtcataaacaactacgtagttttcttccctcacttggtcaactttatccacgta 2782108  T
Q  128 ggagtgagaaaacaaatccattgattnnnnnnnnnnnncaggtggcttcaatagtagcaagttgccccactatatttcatttctttttactttggcctca 227  Q
    ||||||||||||||||||||||||||            ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2782109 ggagtgagaaaacaaatccattgattaaaaaagaaaaacaggtggtttcaatagtagcaagttgccccactatatttcatttctttttattttggcctca 2782208  T
Q  228 aaatttggctatataaataattgcgagcctttgtgtaagacaatataaaacataacattttcaaggttgatgagatgaagaagaaatgtgagtt 321  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2782209 aaatttggttatataaataattgcgagcctttgtgtaagacaatataaaacataacattttcaaggttgatgagatgaagaagaaatgtgagtt 2782302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University