View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_high_17 (Length: 266)
Name: NF18131_high_17
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 37960541 - 37960305
Alignment:
| Q |
16 |
aaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagct |
115 |
Q |
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| T |
37960541 |
aaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtatcgaaaagaagataagacatttaaagagtcatgctttgttaggagct |
37960442 |
T |
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| Q |
116 |
gaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttg |
215 |
Q |
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| T |
37960441 |
gaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctgtaactgtggttgctggttcaccgaaattggctgtttatgagacagattttg |
37960342 |
T |
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| Q |
216 |
ggtgggggaagcctaagaaatctgatgcagttcatct |
252 |
Q |
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| T |
37960341 |
ggtgggggaagcctaagaaatctgatgctgttcatct |
37960305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 37954613 - 37954496
Alignment:
| Q |
135 |
atagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaa |
234 |
Q |
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||||||||||||||||||||||||||||| | | |||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
37954613 |
atagggaaatgtcaaaacctggtaagtctgttaatgtgattgctggttcaccgaatttggctgtttatgagacagattttggatgggggaagcctaagaa |
37954514 |
T |
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| Q |
235 |
atctgatgcagttcatct |
252 |
Q |
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| T |
37954513 |
atctgatgcagttcatct |
37954496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 246
Target Start/End: Original strand, 37907552 - 37907731
Alignment:
| Q |
67 |
tattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtcttta |
166 |
Q |
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|||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||| ||||||||| |||| | | |||||||||||| || || |
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| T |
37907552 |
tatttaaaagaagataagagattttaagagtgatgctttgttagaagctgaaacgttgatacctgattatatggaattattaaaacctggtaactcattt |
37907651 |
T |
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| Q |
167 |
actgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaaatctgatgcagt |
246 |
Q |
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| T |
37907652 |
gtagtggttgctgggtcacctaaacttgatgtttgtgagactgattttgggtggggaaaaccaaagaaatctgatgcagt |
37907731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 37915663 - 37915880
Alignment:
| Q |
25 |
tgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattg |
124 |
Q |
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||||||| |||||||| |||| ||| || ||| ||| || ||||||| |||||||||| |||| |||||| |||| ||||| |||| |||||| ||| |
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| T |
37915663 |
tgagttagttggaaaagatggtattcttgtggcggcaaatgctattgaacggaagataagagatttcaagagtgatgccttgttgggagttgaaacgttg |
37915762 |
T |
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| Q |
125 |
atgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtggggga |
224 |
Q |
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||| |||||||||||||||| |||||| ||||| ||| | | ||||| |||| || || ||| | | ||||||||| || |||||||||||||| | |
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| T |
37915763 |
atgcctgattatagggaaataataaaaccaggtaactctgttaaaatggtttctgggtcgcctaaacttgatgtttatgagactgattttgggtggggaa |
37915862 |
T |
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| Q |
225 |
agcctaagaaatctgatg |
242 |
Q |
| |
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| || |||||||| |||| |
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| T |
37915863 |
aaccaaagaaatccgatg |
37915880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 3783796 - 3784035
Alignment:
| Q |
16 |
aaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcat---gctttgttagga |
112 |
Q |
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|||||| | ||||||| |||||| ||||||||||||| ||||| ||| |||||| |||| |||||||||| |||| |||||| || ||||||||||| |
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| T |
3783796 |
aaagagggctgagttagttggaacaaatgggattgttgcggctgcaaatggtatcgaaaggaagataagagatttcaagagtgataatgctttgttaggt |
3783895 |
T |
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| Q |
113 |
gctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagatt |
212 |
Q |
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| T |
3783896 |
cctaaatggtggacttctgatcatagtgaattatcaaaacctggtaagtctgttgtaggaattgctggctcacctaaatttgatgtttatgagactgact |
3783995 |
T |
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| Q |
213 |
ttgggtgggggaagcctaagaaatctgatgcagttcatct |
252 |
Q |
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| T |
3783996 |
tcgggtgggggaagcctaaaaaatctgatgcagttcatct |
3784035 |
T |
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