View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_high_19 (Length: 252)
Name: NF18131_high_19
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 32690571 - 32690339
Alignment:
| Q |
15 |
atacatatcagtaaaattgagttgttgcaataatatatgtcaaggggttgtttaaccttacatttaatcaaaatttcactcaatgtattgagagaatgat |
114 |
Q |
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| T |
32690571 |
atacatatcagtaaaattgagttcttacaataatatatgtcaaggggttgtttaaccttacatttaatcaaaatttcactcaatgtattgagagaatgat |
32690472 |
T |
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| Q |
115 |
agagatattagtatccttttaccattgtctcacgaaattaaattaagcaacactaatatcaaactagccaaattatg-nnnnnnnttaaggtgcatggat |
213 |
Q |
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| T |
32690471 |
agagatattagtatccttttaccattgtctcacgaaattaaattaagcaacactaatatcaaactagccaaattatgaaaaaaaattaaggtgcatggat |
32690372 |
T |
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| Q |
214 |
atgc----atgtcataactttttccaatctact |
242 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
32690371 |
atgcatgtatgtcataactttttccaatctact |
32690339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 32681767 - 32681622
Alignment:
| Q |
46 |
aatatatgtcaaggggttgtttaaccttacatttaatcaaaatttcactcaatgtattgagagaatgatagagatattagtatccttttaccattgtctc |
145 |
Q |
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||||||||||||| ||||| || ||||||||||||||| |||||| || | |||||||||||||||| ||||||||| | |||||||||| | | | || |
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| T |
32681767 |
aatatatgtcaagtggttgctttaccttacatttaatccaaattttacctagtgtattgagagaatgagagagatatttgaatccttttactagtatgtc |
32681668 |
T |
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| Q |
146 |
acgaaatt-aaattaagcaacactaatatcaaactagccaaattatg |
191 |
Q |
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| T |
32681667 |
acaaaattaaaattaatcaacac-aatgtcaaacaaaccaaattatg |
32681622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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