View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18131_low_1 (Length: 830)
Name: NF18131_low_1
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_1 |
 | |
|
| [»] scaffold0133 (6 HSPs) |
| | |
|
| [»] scaffold0144 (4 HSPs) |
| | |
|
| [»] scaffold0256 (2 HSPs) |
| | |
|
| [»] scaffold0511 (2 HSPs) |
| | |
|
| [»] scaffold0230 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 497; Significance: 0; HSPs: 20)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 164 - 775
Target Start/End: Complemental strand, 16986929 - 16986317
Alignment:
| Q |
164 |
ttgtcaattagagttcaccatataagtctctttgataaaaaatcaaaacatgattacatgattccctaccaaaaatttgattccttgcgaacctttcttg |
263 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
16986929 |
ttgtcaattagagttcaccatatgagtctctttgataaaaaatcaaaacatgattacatgattccctgccaaaaagttgattccttgcgaacctttcttg |
16986830 |
T |
|
| Q |
264 |
agtataaaccaccctccaagaatttaaatgtgttactatcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagttt |
363 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16986829 |
agtataaacaaccctccaagaatttaaatgcgctactatcaaaaactcctcttcgagctttacatacaagttctcatcaactatcatcattgaagagttt |
16986730 |
T |
|
| Q |
364 |
aatgcatttgaggtacttgaaactttcctcttgtgacatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagat |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16986729 |
aatgcatttgaggtacttgaaactttcctcttgtgacatcacaactttgcctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagat |
16986630 |
T |
|
| Q |
464 |
tgtgtt-ttttgtctacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactcctttta |
562 |
Q |
| |
|
|||||| |||| |||| |||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
16986629 |
tgtgtttttttatctagttttcccaaacaatttacaaaattgaaggaccttcgacatctcatgattaaagattgcccgtcattgatatcaactcctttta |
16986530 |
T |
|
| Q |
563 |
gaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggagg |
662 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16986529 |
gaattagggagttaacttgtttgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggagg |
16986430 |
T |
|
| Q |
663 |
caagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtca |
762 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16986429 |
caagctatacatcaaaggccttgagaatgtgtcaaataaagaggatgctaaagaagctaatttgattggaaagaaggacttaaatagcttatatttgtca |
16986330 |
T |
|
| Q |
763 |
tggggcgatgatg |
775 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
16986329 |
tggggtgatgatg |
16986317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 167 - 767
Target Start/End: Complemental strand, 16787439 - 16786838
Alignment:
| Q |
167 |
tcaattagagttcaccatataagtctctttgataaaaaatcaaaacatgattacatgattccctaccaaaaatttgattccttgcgaacctttcttgagt |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787439 |
tcaattagagttcaccatataagtctctttgataacaaatcaaaagatgactacatgattcccttccaaaaatttgattccttgcgaacctttcttgagt |
16787340 |
T |
|
| Q |
267 |
ataaaccaccctccaagaatttaaatgtgttactatcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaat |
366 |
Q |
| |
|
|||||||||| |||||||| |||||| |||| ||||| | || |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
16787339 |
ataaaccaccttccaagaacttaaatatgttgctatctagcacccctcttcgagctttacatgcaagttttcatcaactctcatcattgatgagtttaat |
16787240 |
T |
|
| Q |
367 |
gcatttgaggtacttgaaactttcctcttgtgacatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgt |
466 |
Q |
| |
|
|| |||||||||||| |||| | || |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
16787239 |
tcacttgaggtacttggaactcaaccaaagtcccatcacaatcttaccaggttctgtttgtagactgcagaaattgcaaacactaaaacttgaacgttgt |
16787140 |
T |
|
| Q |
467 |
-gttttttgtctacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaa |
565 |
Q |
| |
|
|||| | || | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| || |
|
|
| T |
16787139 |
cattttctatccagttttcctaaacaattgatagaattgaaggaccttcgacatctcatgattaaaaattgccattcattgatgtcatctccttttaaaa |
16787040 |
T |
|
| Q |
566 |
ttgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaa |
665 |
Q |
| |
|
||||| |||| |||||||||||||||| | ||| |||||| |||| || | ||||||| | ||||||||| |||||| |||| || |||||||||| || |
|
|
| T |
16787039 |
ttgggaagttcacttgtctgaaaacatggtccattttcattgttgattcaaaaactggttatggtttagccgagctatgcaacctataattaggaggaaa |
16786940 |
T |
|
| Q |
666 |
gctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgg |
765 |
Q |
| |
|
||| |||| ||| ||||||||||| | || ||||| |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
16786939 |
tctacacatcaaagtccttgagaatgtatcgaatgaagagcatgctagagacgctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgg |
16786840 |
T |
|
| Q |
766 |
gg |
767 |
Q |
| |
|
|| |
|
|
| T |
16786839 |
gg |
16786838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 168 - 766
Target Start/End: Complemental strand, 16657483 - 16656884
Alignment:
| Q |
168 |
caattagagttcaccatataagtctctttgataaaaaatcaaaacatgattacatgattccctaccaaaaatttgattccttgcgaacctttcttgagta |
267 |
Q |
| |
|
||||||||||||||||||| || || | |||||| ||||||||| |||| ||||||||||||| ||||||| |||||||||||||||| || |||||||| |
|
|
| T |
16657483 |
caattagagttcaccatatcagcctgtgtgataacaaatcaaaagatgactacatgattcccttccaaaaagttgattccttgcgaactttccttgagta |
16657384 |
T |
|
| Q |
268 |
taaaccaccctccaagaatttaaatgtgttactatcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatg |
367 |
Q |
| |
|
|| | ||| | |||||||||| ||| ||| ||||||| |||||||| ||||||||| || ||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
16657383 |
tacgcgaccttgcaagaatttagatgcgtttctatcaagcactcctctccgagctttatgtataagttcttatcaactctcgtcattgaagaatttaata |
16657284 |
T |
|
| Q |
368 |
catttgaggtacttgaaactttcctcttgtgacatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtg |
467 |
Q |
| |
|
||||||||||||||| |||| | |||| |||||||| || |||| ||| |||||| ||| || ||||| |||||||| |||||| | |||| |
|
|
| T |
16657283 |
catttgaggtacttggttctttacggaagtgatatcacaaccttgcctgcgtctttttgtaaacttcaaaaattgcaaacacttaaacttctaagttgtt |
16657184 |
T |
|
| Q |
468 |
-ttttttgtctacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaat |
566 |
Q |
| |
|
|||||| |||| |||||| |||||||| || ||||| ||||||||||||||||||| ||||||| ||| || ||||||| |||||||||||||| ||| |
|
|
| T |
16657183 |
attttttatctagttttccaaaacaattcacaaaattgcaggaccttcgacatctcattattaaaagttgtccatcattgaaatcaactccttttaaaat |
16657084 |
T |
|
| Q |
567 |
tgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaag |
666 |
Q |
| |
|
|||| |||||||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16657083 |
tggggagttaactagtctccaaacattgaactatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaag |
16656984 |
T |
|
| Q |
667 |
ctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggg |
766 |
Q |
| |
|
|||||||| |||| |||||||||||| | | || || ||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
16656983 |
ctatacatcaaaggccttgagaatgtgtcaattgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatcgcttatatttgtcatggg |
16656884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 219 - 772
Target Start/End: Complemental strand, 16796586 - 16796029
Alignment:
| Q |
219 |
acatgattccctaccaaaaatttgattccttgcgaacctttcttgagtataaaccaccctccaaga---atttaaatgtgttactatcaaaaactcctct |
315 |
Q |
| |
|
|||||||||| | | ||||| |||| |||||||||||||||||||| | |||||||||| ||| | ||||| ||||||| | ||||| |||||| |
|
|
| T |
16796586 |
acatgattcctttcaaaaaagttgaatccttgcgaacctttcttgaatttaaaccacccaccaccataaatttagatgtgttgccatcaatcgttcctct |
16796487 |
T |
|
| Q |
316 |
tcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaactttacct |
415 |
Q |
| |
|
|||||||||| |||||||||| |||| |||| |||||||||| |||||| ||| ||||||||||| ||||| | ||| | |||||||| || ||| |
|
|
| T |
16796486 |
ccgagctttacgtacaagttcttgtcaattctcttcattgaagaatttaatacatgtgaggtacttggaacttaacgaatgttatatcacaaccttgcct |
16796387 |
T |
|
| Q |
416 |
ggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattg-tgttttttgtctacttttcccaaacaatttgcagaattgaaggaccttc |
514 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||| ||||||||| |||| | |||||| |||| ||||||||||||||| | ||||| ||||||||| |
|
|
| T |
16796386 |
gcgtctgtttgtagactgcagaaattgcaaacacttaaacttgaacattgctattttttctctagttttcccaaacaattcaaaaaattgcaggaccttc |
16796287 |
T |
|
| Q |
515 |
gacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggttt |
614 |
Q |
| |
|
|||||||||| |||||| |||| || ||||||| |||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||| || |
|
|
| T |
16796286 |
gacatctcataattaaagattgtccatcattgaaatcaactccttttagaattggggagttatctagtctgcaaacattgaccaatttcatagttgattc |
16796187 |
T |
|
| Q |
615 |
agaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctaga |
714 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| || || || ||||||||| |
|
|
| T |
16796186 |
aaaaactgggtttggtttagcagagctacacaacttacaattaggaggcaggctatacatcaaaggccttgagaatgtgttaaatgaggaggatgctaga |
16796087 |
T |
|
| Q |
715 |
gaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggggcgatg |
772 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| | |||||||||||||||| |||| |
|
|
| T |
16796086 |
aaagctaatttgattggcaagaaagacttaaatcacctatatttgtcatggggtgatg |
16796029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 310 - 767
Target Start/End: Original strand, 16868823 - 16869281
Alignment:
| Q |
310 |
tcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaact |
409 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||||||||||||||| |||||| |||||||||| ||| ||||| | | |||| |||||||| |
|
|
| T |
16868823 |
tcctctccgagctttagctacaagttcatttcaactctcatcattgaagaatttaatacatttgaggttgttggtactttgcgatagtgatatcacaacc |
16868922 |
T |
|
| Q |
410 |
ttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtg-ttttttgtctacttttcccaaacaatttgcagaattgaagg |
508 |
Q |
| |
|
|| || | ||| |||||| |||||||||||| |||||||| | | ||||| ||| |||||| |||| ||||||||||||||| | ||||| ||| |
|
|
| T |
16868923 |
ttgcccgcgtctatttgtaaactgcagaaattgcaaacacttagaattgaatcttgcaattttttctctagttttcccaaacaattcaaaaaattgcagg |
16869022 |
T |
|
| Q |
509 |
accttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagt |
608 |
Q |
| |
|
|||||||||||||||||||| || |||| || ||||||| |||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||| || |
|
|
| T |
16869023 |
accttcgacatctcatgattgaagattgtccatcattgaaatcaactcctttcagaattggagagttaactagtctgcaaacattgaccaatttcatggt |
16869122 |
T |
|
| Q |
609 |
tggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgat |
708 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
16869123 |
tggttcaaaaactgggtttggtttagcagagctacacaagttacaattaggaggcaagctatacatcaaaggtcttgagaatgtgtcgaacgaagatgat |
16869222 |
T |
|
| Q |
709 |
gctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
767 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16869223 |
gctagagaagctaatttgattggaaagaaggacttaaatcgcttatatttgtcatgggg |
16869281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 219 - 810
Target Start/End: Complemental strand, 17068923 - 17068324
Alignment:
| Q |
219 |
acatgattccctaccaaaaatttgattccttgcgaacctttcttgagtataaaccaccctccaagaatttaaatgtgttactatcaaaaactcctcttcg |
318 |
Q |
| |
|
|||||||||| | | ||||| |||| |||||||||||||||||||| ||||||| ||| ||| | || | ||||||| ||||| | | | |||| || |
|
|
| T |
17068923 |
acatgattcctttcaaaaaagttgaatccttgcgaacctttcttgaacttaaaccaacctacaaaagttcagatgtgttgctatcgatcatttctctccg |
17068824 |
T |
|
| Q |
319 |
agctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaactttacctggt |
418 |
Q |
| |
|
|||||||| | || ||||| |||||||||| |||||||||| |||||| ||||||||||||||| |||||| | ||| ||||||||| || |||| |
|
|
| T |
17068823 |
agctttacgttcaggttcttatcaactctcgtcattgaagaatttaatacatttgaggtacttggaactttacagaagtggcatcacaaccttgcctgcg |
17068724 |
T |
|
| Q |
419 |
tctgtttgtagactgcagaaattacaaacactaaaacttgaagattg-tgttttttgtctacttttcccaaacaatttgcagaattgaaggaccttcgac |
517 |
Q |
| |
|
|||||||||| |||||| ||| | |||||||| ||||||||| |||| | || ||| |||| ||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
17068723 |
tctgtttgtaaactgcataaactgcaaacacttaaacttgaatattgctcttatttctctagttttcccgaacaattcaacaaattgcaggaccttcgac |
17068624 |
T |
|
| Q |
518 |
atctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttaga |
617 |
Q |
| |
|
|||||||||||||| |||| | ||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || | | |
|
|
| T |
17068623 |
atctcatgattaaagattgtcaatcattgaaatcaagtccttttagaattggggagttaactagtctgaaaacattgaccaatttcatagttgattcaaa |
17068524 |
T |
|
| Q |
618 |
aactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaa |
717 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||| |||||||| | || ||||| ||||||| | || |
|
|
| T |
17068523 |
aactggttatggtttagcagagctacaaaacttacaattaggaggcaagctacacatcaaaggccttcagaatgtgtcgaaagaagaggatgctaaaaaa |
17068424 |
T |
|
| Q |
718 |
gctaatttgattggaaagaaggacttaaatagcttatatttgtcatggggcgatgatgtgaattcaa-------cggtgttgatgctgagcgagtactgg |
810 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||| |
|
|
| T |
17068423 |
gctaatttgaatggcaagaaggacttaaatagcttatatttgtcatggggtgatgaagctaattcaaaagttggcggtgttgatgctgagcgagtactgg |
17068324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 308 - 767
Target Start/End: Complemental strand, 16780506 - 16780045
Alignment:
| Q |
308 |
actcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaa |
407 |
Q |
| |
|
|||||||| |||||||||| |||||| ||| ||| ||||| ||||||||| ||||||||||||| |||||||| |||||| | |||| || | || |
|
|
| T |
16780506 |
actcctctccgagctttacgtacaaggtcttgtcatctctctgcattgaagaatttaatgcatttgcggtacttggaactttacaagagtgatataaaaa |
16780407 |
T |
|
| Q |
408 |
ctttacctggttctgtttgtagactgc-agaaattacaaacactaaaacttgaagattgtgttttt-tgtctacttttcccaaacaatttgcagaattga |
505 |
Q |
| |
|
| || |||| |||||||||||| ||| ||||||| |||||||| |||||||||| ||||| || | | |||| |||||| |||||||| || ||||| |
|
|
| T |
16780406 |
ccttgcctgcgtctgtttgtagattgccagaaattgcaaacacttaaacttgaaggttgtgattatctttctagttttccgaaacaattgacacaattgc |
16780307 |
T |
|
| Q |
506 |
aggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcat |
605 |
Q |
| |
|
| |||||| ||||||| | |||| ||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| |
|
|
| T |
16780306 |
atgaccttagacatcttgttattattgcttgccagagattgacatcaactccttttagaattggggagttaacttgtctgaaaacattgactactttcat |
16780207 |
T |
|
| Q |
606 |
agttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagat |
705 |
Q |
| |
|
||||||| | ||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| ||| |||| ||| || ||||| |
|
|
| T |
16780206 |
tgttggttcaaaaaatgggtttggtttagcagagctacacaacttgcaattaggaggcaagctacacatcaaaggccttcagaaagtgttgaatgaagag |
16780107 |
T |
|
| Q |
706 |
gatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
767 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16780106 |
gatgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
16780045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 16987325 - 16987174
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16987325 |
catcaatggatttctgtactggaaagtgagatttggaatttacctgaggatgatcctatcatttctgctttgagactaagctacttcaacatgaaattgt |
16987226 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16987225 |
cactaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
16987174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 16787838 - 16787687
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
16787838 |
catcaatggatttctgtactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattgt |
16787739 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
16787738 |
ccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaat |
16787687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 16797040 - 16796889
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
16797040 |
catcaatggatttctgtactggaaagtgaattttggaatttacctcaggttgatcgtatcatgtctgctttgacactaagctactttaacttgaaattgt |
16796941 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
16796940 |
cattgaggccatgttttactttctgcgctgtttttcctaaggattttgaaat |
16796889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 16657883 - 16657732
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| |||| ||| | | | ||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
16657883 |
catcaatggatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgt |
16657784 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
||| |||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
16657783 |
cattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaat |
16657732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 16780970 - 16780819
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
||||||||| |||||||| |||| ||||| ||||||| ||| |||||||| | |||||||||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
16780970 |
catcaatggctttctgtaaaggaaagtgagctttggaagttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaatttgt |
16780871 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
16780870 |
ccttaaggccgtgttttactttttgtgctgtttttcctaaggattttgaaat |
16780819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 16868290 - 16868441
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||||||| | || ||| | | | ||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
16868290 |
catcaatggacttctgtggtggaaagtgagttttggaatttagcagatgataaccatgtcatgtctgctttgagactgagctactttaacttgaaattgt |
16868389 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
||| |||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
16868390 |
cattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaat |
16868441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 17069377 - 17069230
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| || || | ||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17069377 |
catcaatggatttctgtggtggaaagtgagttttggaatttagacgatgagaaccctgtcatgtctgctttgagactaagctactataacttgaaattgt |
17069278 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttg |
160 |
Q |
| |
|
||| |||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
17069277 |
cattgaggccatgttttactttctgtgttgtttttcctaaggattttg |
17069230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 18806486 - 18806637
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
||||||||| |||||||| |||| || ||||||||| ||| | ||||| ||||||||||||||| ||||||||| |||||||| || |||||||| | |
|
|
| T |
18806486 |
catcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtctgttttgagactcagctactttaatttgaaattat |
18806585 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
| | |||| |||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
18806586 |
cactgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaat |
18806637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 18873480 - 18873631
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
||||||||| |||||||| |||| || ||||||||| ||| | ||||| ||||||||||||||| |||||||| |||||||| || |||||||| | |
|
|
| T |
18873480 |
catcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtctgtattgagactcagctactttaatttgaaattat |
18873579 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
| | |||| |||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
18873580 |
cactgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaat |
18873631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 623 - 767
Target Start/End: Original strand, 18807348 - 18807492
Alignment:
| Q |
623 |
ggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaa |
722 |
Q |
| |
|
||||||||||||||||| |||| |||||||| |||||||||||||| |||| ||| ||||||||||| ||| ||| ||||||| ||||||||| |
|
|
| T |
18807348 |
ggtttggtttagcagagttacatgacttacaactaggaggcaagctacacatcagaggccttgagaatgtatctagtgaatgggatgctaaagaagctaa |
18807447 |
T |
|
| Q |
723 |
tttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
767 |
Q |
| |
|
||||||||| || ||||| |||||| |||| || |||||||||| |
|
|
| T |
18807448 |
tttgattggtaaaaaggagttaaattgcttgtacctgtcatgggg |
18807492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 556 - 731
Target Start/End: Complemental strand, 16842885 - 16842710
Alignment:
| Q |
556 |
ccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaat |
655 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| |||||||| || |||||| || ||| ||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
16842885 |
ccttttaaaattggggggttaactcatctgagaacattgagcattttcattgtacgttcagaggctgggtttggtttagcagagctacataacttagaac |
16842786 |
T |
|
| Q |
656 |
taggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattgg |
731 |
Q |
| |
|
|| ||||||| ||| |||| |||| ||||| |||||| | || ||| ||||||||||||||||| || ||||| |
|
|
| T |
16842785 |
taagaggcaaactacacatcaaaggccttgaaaatgtgacgaatgaaagggatgctagagaagctaagttaattgg |
16842710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 16843134 - 16843053
Alignment:
| Q |
308 |
actcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaacttt |
389 |
Q |
| |
|
|||||||| ||||| |||| |||||||||| |||||||||| | ||||||| |||||| ||||||||||||||| |||||| |
|
|
| T |
16843134 |
actcctctccgagcattacgtacaagttcttctcaactctcagccttgaagaatttaatccatttgaggtacttggaacttt |
16843053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 622 - 767
Target Start/End: Original strand, 18874344 - 18874489
Alignment:
| Q |
622 |
gggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagcta |
721 |
Q |
| |
|
||||||||||||||| || |||| || ||||| |||||||||||||| |||| ||| ||||||||||| ||| ||| ||||||| |||||||| |
|
|
| T |
18874344 |
gggtttggtttagcacagttacatgacctacaactaggaggcaagctacacatcagaggccttgagaatgtatctagtgaatgggatgctaaagaagcta |
18874443 |
T |
|
| Q |
722 |
atttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
767 |
Q |
| |
|
|||||||||| || ||||| |||||| |||| || |||||||||| |
|
|
| T |
18874444 |
atttgattggtaaaaaggagttaaatcgcttgtacctgtcatgggg |
18874489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 164 - 767
Target Start/End: Complemental strand, 12324 - 11723
Alignment:
| Q |
164 |
ttgtcaattagagttcaccatataagtctctttgataaaaaatcaaaacatgattacatgattccctaccaaaaatttgattccttgcgaacctttcttg |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12324 |
ttgtcaattagagttcaccatataagtctctttgataaaaaattcagatatgactacatgattcccttccaaaaatttgattccttgcgaacctttcttg |
12225 |
T |
|
| Q |
264 |
agtataaaccaccctccaagaatttaaatgtgttactatcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagttt |
363 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||| ||||||| ||| | ||||||||||||||||||| ||||||| ||||||||||| || ||| |
|
|
| T |
12224 |
agtataaaccaccctcaaagaatctagatgtgtttctatcaaccacttcgcttcgagctttacatacaaagtctcatcgactctcatcatcaaa---ttt |
12128 |
T |
|
| Q |
364 |
aatgcatttgaggtacttgaaactttcctcttgtgacatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagat |
463 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| ||| || || |||||||||||||| ||||| |||||||| |||||||||||||||||| | |
|
|
| T |
12127 |
aatgcatttgaggtacttggaactttcatcttgtgacttcattaccttgcctggttctgtttgcagactacagaaattgcaaacactaaaacttgaaaaa |
12028 |
T |
|
| Q |
464 |
tgtgttttt-tgtctacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactcctttta |
562 |
Q |
| |
|
||| | | | ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
12027 |
tgtcatcatctatctgattttcccaaacaatttacaaaattgaaggaccttcgacatctcatgattaaaaattgcagttcattgaaatcaactcctttta |
11928 |
T |
|
| Q |
563 |
gaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggagg |
662 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11927 |
aaattggggagttaacttgtctgaaaacattgaccattttcattgttggttcaaaaactgggtttggtttagcagagctacacaacttacaattaggagg |
11828 |
T |
|
| Q |
663 |
caagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtca |
762 |
Q |
| |
|
|||||| ||||| |||| ||| |||| ||| | | ||||| ||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
11827 |
aaagctacacattaaaggccttcagaaagtgtcgattgaagaggatgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtca |
11728 |
T |
|
| Q |
763 |
tgggg |
767 |
Q |
| |
|
||||| |
|
|
| T |
11727 |
tgggg |
11723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 202 - 767
Target Start/End: Complemental strand, 7917 - 7351
Alignment:
| Q |
202 |
aaaatcaaaacatgattacatgattccctaccaaaaatttgattccttgcgaacctttcttgagtataaaccaccctccaagaatttaaatgtgttacta |
301 |
Q |
| |
|
|||||||||| |||| |||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
7917 |
aaaatcaaaatatgaccacataattcccttccaaaaagttgattccttgcgaacctttcttgagtataaaccaccctccaagaatttagatgtgtttctg |
7818 |
T |
|
| Q |
302 |
tcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgaca |
401 |
Q |
| |
|
|||| || ||||||||| ||| | |||| |||| || ||||||||| ||||||||||||| ||||||||||||||||| || ||| | || ||| |
|
|
| T |
7817 |
tcaagcacctctcttcgagttttgcttacacgttcaaatgaactctcattattgaagagtttagtgcatttgaggtacttggaaatttatgatagtaaca |
7718 |
T |
|
| Q |
402 |
tcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgttttt-tgtctacttttcccaaacaatttgcaga |
500 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||| | |||| |||||||||||||||| || | |
|
|
| T |
7717 |
tcacaaccttgcctgggtctgtttgtagactgcagaaattgcaaacactaaaacttgaacgttgccatttgctatctagttttcccaaacaatttacaaa |
7618 |
T |
|
| Q |
501 |
attgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| | | |
|
|
| T |
7617 |
attgaaggaccttcgacatctcatgattaaaaattgccattcattgatatcagctccttttagaattgggcagttaactagcctgaaaacattgacgatt |
7518 |
T |
|
| Q |
601 |
ttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacg |
700 |
Q |
| |
|
||||| ||||||| | ||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||| || |||||||||||||| | |||| |
|
|
| T |
7517 |
ttcattgttggttcaaaaactgggtatggtttagcacagctacacaacttacagttaggaggcaagctacacatcaaatgtcttgagaatgtgtcgaacg |
7418 |
T |
|
| Q |
701 |
aagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
767 |
Q |
| |
|
|||| |||||||||||| ||||||||||| | ||||||||||| || | ||||||||||| ||||| |
|
|
| T |
7417 |
aagaggatgctagagaaactaatttgattagcaagaaggacttggatcgtttatatttgtcttgggg |
7351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 219 - 767
Target Start/End: Complemental strand, 17472 - 16923
Alignment:
| Q |
219 |
acatgattccctaccaaaaatttgattccttgcgaacctttcttgagtataaaccaccctccaagaatttaaatgtgttactatcaaaaactcctcttcg |
318 |
Q |
| |
|
|||||||||||| ||||| |||| || ||||||||||||||||||| ||| ||||| ||| |||| ||||||| | ||| ||||| || || |
|
|
| T |
17472 |
acatgattccctttaaaaaaattgaatcgttgcgaacctttcttgagtttaatgaacccttcaaaaattcctatgtgttgccatctgtcactccactccg |
17373 |
T |
|
| Q |
319 |
agctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaactttacctggt |
418 |
Q |
| |
|
|||||||| || ||||| | ||| ||||| |||| |||| ||||||||||||| |||||||| |||||| | |||| || | ||| || || | |
|
|
| T |
17372 |
agctttacgtataagtttttgtcatctctctgcattaaagaatttaatgcatttgcggtacttggaactttacatgagtgatataagaaccttgcccgcg |
17273 |
T |
|
| Q |
419 |
tctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgttttt-tgtctacttttcccaaacaatttgcagaattgaaggaccttcgac |
517 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||| ||||| | || | |||| |||||| |||||||| || ||||| | |||||| ||| |
|
|
| T |
17272 |
tctgtttgtagactgcagaaattgcaaacacttaaacttgaaggttgtgatattctttctagttttccgaaacaattgacacaattgcatgaccttagac |
17173 |
T |
|
| Q |
518 |
atctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttaga |
617 |
Q |
| |
|
|||| | |||| ||||| ||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||||| ||||||| | | |
|
|
| T |
17172 |
atcttgttattattgcttgccggagattgacatctactcctttcagaattggggagttaacttgtctgaaaacattgaccactttcattgttggttcaaa |
17073 |
T |
|
| Q |
618 |
aactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaa |
717 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||| ||| |||| ||| | || ||||| ||||| | | || |
|
|
| T |
17072 |
aactgggtttggtttagtagagctacacaacttacaattaggaggcaagctacacatcaaaggccttcagaaagtgtcgaatgaagaggatgcaaaacaa |
16973 |
T |
|
| Q |
718 |
gctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
767 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
16972 |
gctaatttgattggcaagaaggacttaaatcgcttatatttgtcttgggg |
16923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 12720 - 12569
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
12720 |
catcaatggatttctgtactagaaagtgagttttggagtttacctgaggttgatcctatcatgtctgctttgagactaagctattttaacttgaaattgt |
12621 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||| || |||| |||||| |
|
|
| T |
12620 |
cattgaggccatgttttactttctgtgctgtttttcccaaagattatgaaat |
12569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #5
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 8378 - 8227
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
8378 |
catcaatggatttctgtactggaaagtgaattttggaatttgcctgaggttgattctatcatgtctgctttgagaataagctactttaacttgaaattgt |
8279 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
||| || ||||||||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
8278 |
cattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaat |
8227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 17926 - 17775
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
||||||||| |||||||| |||| ||||| ||||||||||| |||||||| | ||||| |||||||||||||||||||||||||| || ||||||| || |
|
|
| T |
17926 |
catcaatggctttctgtaaaggaaagtgaggtttggaatttatctgaggataaccctataatgtctgctttgagactaagctactttaatttgaaatcgt |
17827 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
|| ||||| |||||||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
17826 |
ccttgaggccctgttttactttttgtactgtttttcctaaggattttgaaat |
17775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 252; Significance: 1e-139; HSPs: 4)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 168 - 766
Target Start/End: Complemental strand, 36961 - 36362
Alignment:
| Q |
168 |
caattagagttcaccatataagtctctttgataaaaaatcaaaacatgattacatgattccctaccaaaaatttgattccttgcgaacctttcttgagta |
267 |
Q |
| |
|
||||||||||||||||||| || || |||||||| ||||||||| |||| ||||||||||||| |||||| |||||||||||||||| || |||||||| |
|
|
| T |
36961 |
caattagagttcaccatatcaggctgtttgataacaaatcaaaagatgactacatgattcccttccaaaatgttgattccttgcgaactttccttgagta |
36862 |
T |
|
| Q |
268 |
taaaccaccctccaagaatttaaatgtgttactatcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatg |
367 |
Q |
| |
|
|| | ||| | |||||||||| ||| ||| ||||||| |||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||| |
|
|
| T |
36861 |
tacgcgaccttgcaagaatttagatgcgttgctatcaagcactcctctccgagctttacgtaccagttcttatcaactctcgtcattgaagaatttaata |
36762 |
T |
|
| Q |
368 |
catttgaggtacttgaaactttcctcttgtgacatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgt- |
466 |
Q |
| |
|
||||||||||||||| |||||| | |||| |||||||| || |||| |||||||||| ||| || ||||| |||||||| |||||| || |||| |
|
|
| T |
36761 |
catttgaggtacttggaactttacagaagtgatatcacaaccttgcctgcgtctgtttgtaaactacaaaaattgcaaacacttaaacttcgaggttgtt |
36662 |
T |
|
| Q |
467 |
gttttttgtctacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaat |
566 |
Q |
| |
|
||||||| |||| |||||||||| ||| || ||||| ||||||||||||||||||| ||| || |||| || ||||||| |||||||||||||| ||| |
|
|
| T |
36661 |
gttttttatctagttttcccaaaacattcacaaaattgcaggaccttcgacatctcattattgaagattgtccatcattgaaatcaactccttttaaaat |
36562 |
T |
|
| Q |
567 |
tgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaag |
666 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||||||||| || | ||| ||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36561 |
tggggagttaactagtctccaaacattgaccaatttcatagttgattcaaaaattggttttcgtttagcagagctacacaacttacaattaggaggcaag |
36462 |
T |
|
| Q |
667 |
ctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggg |
766 |
Q |
| |
|
||||||| |||| |||||||||||| | || || || ||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
36461 |
ttatacatcaaaggccttgagaatgtgtcaaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatcgcttatatttgtcatggg |
36362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 280 - 764
Target Start/End: Complemental strand, 35423 - 34938
Alignment:
| Q |
280 |
caagaatttaaatgtgttactatcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtac |
379 |
Q |
| |
|
|||||||||| ||| ||| ||||||| |||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||| |||||||||||| |
|
|
| T |
35423 |
caagaatttagatgcgttgctatcaagcactcctctccgagctttatgtacaagttcttatcaactctcgtcattgaagaatttaatacatttgaggtac |
35324 |
T |
|
| Q |
380 |
ttgaaactttcctcttgtgacatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtg-ttttttgtcta |
478 |
Q |
| |
|
||| | |||| | |||| |||||||| || | || ||||||||| ||| || ||||| |||||||| |||||| || |||| |||||| |||| |
|
|
| T |
35323 |
ttggatctttacgtaagtgatatcacaaccttgcgtgcgtctgtttgtgaactacaaaaattgcaaacacttaaacttcaacgttgttattttttatcta |
35224 |
T |
|
| Q |
479 |
cttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaac |
578 |
Q |
| |
|
||||||||||||||| | ||||| || |||||||||||||| ||||||||| ||| || |||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
35223 |
gttttcccaaacaattcaccaaattgcagaaccttcgacatctcgtgattaaaacttgtccgtcattgctatcaactccttttagaattggggagttaac |
35124 |
T |
|
| Q |
579 |
ttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaa |
678 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35123 |
ttgtttgaaaacattgaccaatttcatagttggttcagaaactgagtttggtttagcagagctacacaacttacaattaggaggcaagctatacatcaat |
35024 |
T |
|
| Q |
679 |
ggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatg |
764 |
Q |
| |
|
|| |||||||||||| | | || || ||||||||| |||| ||||||||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
35023 |
ggccttgagaatgtgtcggatgaggaggatgctagaaaagcaaatttgattggcaagaaagacttaaatcgcttatatttgtcatg |
34938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 37361 - 37210
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| |||| ||| | | ||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
37361 |
catcaatggatttctgtggtggaaagtgagttttggaatttagctgatgataaccaagtcatgtctgctttgagactgagctactttaacttgaaattgt |
37262 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
||| |||||||||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
37261 |
cattgaggccatgttttactttttgtgctgtttttcctaaggattttaaaat |
37210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 572 - 755
Target Start/End: Original strand, 2892 - 3075
Alignment:
| Q |
572 |
agttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctata |
671 |
Q |
| |
|
||||||||||||| |||||||||| || |||||| || |||| | | ||||| |||||||||||| ||| ||||||||||||||||||||||| | |
|
|
| T |
2892 |
agttaacttgtctaaaaacattgagcactttcatcgtgggttcgaagatggggttcggtttagcagagttacgtgacttacaattaggaggcaagctaca |
2991 |
T |
|
| Q |
672 |
cattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttata |
755 |
Q |
| |
|
||| |||| |||||||||||| | | ||| ||||||| |||||||||||||||||| || ||||| || ||| ||||||| |
|
|
| T |
2992 |
catcaaaggccttgagaatgtgtcaagtgaatgggatgctaaagaagctaatttgattggtaaaaaggagttgaatcgcttata |
3075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 308 - 767
Target Start/End: Original strand, 38940186 - 38940646
Alignment:
| Q |
308 |
actcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaa |
407 |
Q |
| |
|
|||||||| |||||||||| |||||| ||| ||| ||||| ||||||||| ||||||||||||| |||||||| |||||| |||| |||| ||||||| |
|
|
| T |
38940186 |
actcctctccgagctttacgtacaaggtcttgtcatctctctgcattgaagaatttaatgcatttgcggtacttggaacttttctctagtgatatcacaa |
38940285 |
T |
|
| Q |
408 |
ctttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgttttt-tgtctacttttcccaaacaatttgcagaattgaa |
506 |
Q |
| |
|
| || |||| ||||||||||| |||| |||||| ||||||||||||||||||| |||| || | | |||| ||||||||||||||| || || || | |
|
|
| T |
38940286 |
ccttgcctgtgtctgtttgtaggctgctgaaattgcaaacactaaaacttgaaggttgtaattatctttctagttttcccaaacaattgacaaaactgca |
38940385 |
T |
|
| Q |
507 |
ggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcata |
606 |
Q |
| |
|
| |||||| ||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||| |||||| |||||||| |||||| |
|
|
| T |
38940386 |
gaaccttcaacatctcatgattaaaaattgtcgatcattgaaatcaactccttttagaattggggagttaacttgtttgaaaaaattgaccattttcatt |
38940485 |
T |
|
| Q |
607 |
gttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatg |
706 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || |||| ||| | || || | || |||| | |
|
|
| T |
38940486 |
gttggttcaaaaactggttttggtttagcagagctacacaacttacaattaggaggcaagctacatatcaaaggccttcaaaaagtctcgaataaagagg |
38940585 |
T |
|
| Q |
707 |
atgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
767 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38940586 |
atgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
38940646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 164 - 756
Target Start/End: Original strand, 7053952 - 7054548
Alignment:
| Q |
164 |
ttgtcaattagagttcaccatataagtctctttgataaaaaatcaaaacatgattaca---tgattccctaccaaaaatttgattccttgcgaacctttc |
260 |
Q |
| |
|
||||||||||||||||||||||||||| || | || | ||| ||| | ||| |||| ||||||||| | | ||| |||| |||||||||||||||| |
|
|
| T |
7053952 |
ttgtcaattagagttcaccatataagtttcatagacagtaaagaaaagcttgactacaaaatgattcccttcaataaaattgaatccttgcgaacctttc |
7054051 |
T |
|
| Q |
261 |
ttgagtataaaccaccctccaagaatttaaatgtgttactatcaaaaactcctcttcgagctttacatacaagttctcatcaactctcatcattgaagag |
360 |
Q |
| |
|
|||||| || |||| || |||| || ||| ||||||| | | | | | || ||| |||||||||| |||||||||| | ||| ||| | |||| || |
|
|
| T |
7054052 |
ttgagtttagaccatccaccaaaaaattagatgtgttgccaccgatcaatcttctccgagctttacgtacaagttcttttggactgtcagctttgaggaa |
7054151 |
T |
|
| Q |
361 |
tttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaa |
460 |
Q |
| |
|
||||||||||||||||||| | |||||| | | || |||||||| || ||||| |||||||||||||||||||| || ||||||||||||||| || |
|
|
| T |
7054152 |
tttaatgcatttgaggtacctagaactttgccatagtaggatcacaaccttgcctgggtctgtttgtagactgcagaagttgcaaacactaaaacttaaa |
7054251 |
T |
|
| Q |
461 |
gattgtgttt-tttgtctacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactcctt |
559 |
Q |
| |
|
|| || || ||| ||| ||| ||||||||||| | ||||| | || ||| ||||| || ||||| ||||||| |||||| |||||||||| | |
|
|
| T |
7054252 |
gactgcccttatttttctcatttccccaaacaattgacgcaattgcaagaacttagacatatcgtgattgaaaattgtttttcattagtatcaactccct |
7054351 |
T |
|
| Q |
560 |
ttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattagg |
659 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| ||||| | | ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7054352 |
ttagaattggggagttaacttgtctgaaaacattgaccgttttcattgttggatcaaaaactgggtttggtttagcagagttacacaacttacaattagg |
7054451 |
T |
|
| Q |
660 |
aggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatat |
756 |
Q |
| |
|
||||| ||| |||| ||| |||||||||||| | ||||| | |||||||||||||||||||||||||| || |||||||||||| |||||||| |
|
|
| T |
7054452 |
aggcatgcttcacatcagaggccttgagaatgtgtccaacgacggggatgctagagaagctaatttgattggcaataaggacttaaatcgcttatat |
7054548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 38939649 - 38939800
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
||||||||| |||||||| |||| ||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
38939649 |
catcaatggttttctgtaaaggaaagtgagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattgt |
38939748 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
|| ||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
38939749 |
ccttgaggccatgttttaatttttgtgctgtttttcctaaggattttgaaat |
38939800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 7053584 - 7053704
Alignment:
| Q |
41 |
agttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaaggccatgttttaccttctgtgc |
140 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||||||||||||| || ||||||| || ||||||||| ||| ||||| |||||| | || ||||| |
|
|
| T |
7053584 |
agttttggaatttatctgaggataatccaatcatgtctgctttgaggctgagctactataatttgaaattgccattgaggccttgtttttctttttgtgc |
7053683 |
T |
|
| Q |
141 |
tgtttttcctaaggattttga |
161 |
Q |
| |
|
||||||||| || |||||||| |
|
|
| T |
7053684 |
tgtttttcccaaagattttga |
7053704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 233 - 764
Target Start/End: Complemental strand, 20153846 - 20153317
Alignment:
| Q |
233 |
caaaaatttgattccttgcgaacctttcttgagtataaaccaccctccaagaatttaaatgtgttactatcaaaaactcctcttcgagctttacatacaa |
332 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||| ||||| |
|
|
| T |
20153846 |
caaaaagttgattccttgcggacctttcttgagtataaaccaccctccaagaatttaa-tgtgttcctatcaagcactcctctccgagctttacgtacaa |
20153748 |
T |
|
| Q |
333 |
gttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaactttacctggttctgtttgtagact |
432 |
Q |
| |
|
|| || |||||||||| || |||||| |||||| ||||||||||||||| |||||| |||| || | ||| || | | || |||||||||||| |
|
|
| T |
20153747 |
gtccttttcaactctcaacaatgaagactttaatacatttgaggtacttggaactttatgacagtgatataaaaaccttgcacgattgtgtttgtagact |
20153648 |
T |
|
| Q |
433 |
gcagaaattacaaacactaaaacttgaagattgtgttttttgtc-tacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaa |
531 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||| ||||| | || ||| ||||||||||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
20153647 |
gcagaagttgcaaacactaaaacttgaaaattgttattttttacgtagtttccccaaacaattgacgaaattgcaggaccttcgacatctcatgattaaa |
20153548 |
T |
|
| Q |
532 |
aattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtt |
631 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| | ||||| ||| ||||| |
|
|
| T |
20153547 |
aattgcctatcattcatattaactccttttagaattggggagttaacttgtctgaaaacattgaccactttcattgttggttcaaaaact-ggtatggtt |
20153449 |
T |
|
| Q |
632 |
tagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattgg |
731 |
Q |
| |
|
||| ||||||| |||| |||||||||||||| ||||||||||| || | || |||||||| | || ||||| ||||||||| || |||||||||| | |
|
|
| T |
20153448 |
tagaagagctaaacaagttacaattaggaggaaagctatacatcaaaagcctcaagaatgtgtcaaatgaagagtatgctagaggagataatttgattag |
20153349 |
T |
|
| Q |
732 |
aaagaaggacttaaatagcttatatttgtcatg |
764 |
Q |
| |
|
||| ||||| |||| ||||||||||||||| |
|
|
| T |
20153348 |
caag-aggacataaaacacttatatttgtcatg |
20153317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 177; Significance: 6e-95; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 308 - 767
Target Start/End: Complemental strand, 8488 - 8028
Alignment:
| Q |
308 |
actcctcttcgagctttacatacaagttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaa |
407 |
Q |
| |
|
|||||||| |||| ||||| |||||| ||| || ||||| ||||||||||||||||||||||| |||||||| |||||| | | || | ||||||| |
|
|
| T |
8488 |
actcctctccgagttttacgtacaaggtcttgccatctctctgcattgaagagtttaatgcatttgcggtacttggaactttacgatagtaatatcacaa |
8389 |
T |
|
| Q |
408 |
ctttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgttttt-tgtctacttttcccaaacaatttgcagaattgaa |
506 |
Q |
| |
|
| || || | |||||||||| |||||||||||| |||||||| ||||||||| ||||| || | | |||| |||||| |||||||| || || | | |
|
|
| T |
8388 |
ccttgcccgcgtctgtttgtaaactgcagaaattgcaaacacttaaacttgaatattgtcttcatctttctagttttccaaaacaattgacaaaactaca |
8289 |
T |
|
| Q |
507 |
ggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcata |
606 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||| |||||||| |||||| |
|
|
| T |
8288 |
ggaccttcaacatctcatgattaaaaattgcatatcattgaaatcaactccttttagaattggggagttaacttgtttgaaaaaattgaccattttcatt |
8189 |
T |
|
| Q |
607 |
gttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatg |
706 |
Q |
| |
|
||||||| | ||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| || | ||| | || ||| | || ||||| | |
|
|
| T |
8188 |
gttggttcaaaaactgggtatggtttagcagagctacaaaacttacaattaggaggcaagctacacatcaaacgccttcacaaagtgtcaaatgaagagg |
8089 |
T |
|
| Q |
707 |
atgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
767 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8088 |
atgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
8028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 9002 - 8871
Alignment:
| Q |
33 |
ggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgttattaaggccatgttttacc |
132 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || || ||||||||||| |
|
|
| T |
9002 |
ggaaagtgagctttggaatttaactgaggatgatcctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgagaccatgttttact |
8903 |
T |
|
| Q |
133 |
ttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
|| ||||||||||||||||| |||||| |||| |
|
|
| T |
8902 |
ttttgtgctgtttttcctaaagattttaaaat |
8871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 5e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 234 - 767
Target Start/End: Complemental strand, 13377494 - 13376960
Alignment:
| Q |
234 |
aaaaatttgattccttgcgaacctttcttgagtataaaccaccctccaagaatttaaatgtgttactatcaaaaactcctcttcgagctttacatacaag |
333 |
Q |
| |
|
||||| |||| |||||||||||||||||||||| |||||||||| ||| | |||| || |||| | ||||| |||||||| |||||||||| |||||| |
|
|
| T |
13377494 |
aaaaagttgaatccttgcgaacctttcttgagttcaaaccaccctgcaaaattttagatttgtttccatcaatcactcctctccgagctttacgtacaag |
13377395 |
T |
|
| Q |
334 |
ttctcatcaactctcatcattgaagagtttaatgcatttgaggtacttgaaactttcctcttgtgacatcacaactttacctggttctgtttgtagactg |
433 |
Q |
| |
|
|||| |||||||||| |||||||| | |||| ||| ||||||||||| |||||| || | |||||||| || |||| |||||||| || ||| |
|
|
| T |
13377394 |
ttcttttcaactctcaggattgaagaatataattcatctgaggtacttggaactttatgaaagtaagatcacaaccttgcctgagtctgtttgcaggctg |
13377295 |
T |
|
| Q |
434 |
cagaaattacaaacactaaaacttgaagattgtgttttt-tgtctacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaa |
532 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| || | | |||| |||||| ||| ||||| || ||||| | |||||| ||||||| || |||||| |
|
|
| T |
13377294 |
cagaaattgcaaaccttaaaacttgaacgttgtgattctctttctagttttccaaaaaaatttacacaattggaagaccttagacatcttattattaaag |
13377195 |
T |
|
| Q |
533 |
attgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggttt |
632 |
Q |
| |
|
|||||| |||||| |||||| ||| |||||||| || ||||||||||||||||||||||||||| |||||| ||||| | |||| |||||||||||| |
|
|
| T |
13377194 |
attgccagtcattggtatcaagtccatttagaatcagggagttaacttgtctgaaaacattgaccattttcattgttggctcggaaattgggtttggttt |
13377095 |
T |
|
| Q |
633 |
agcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattgga |
732 |
Q |
| |
|
||| ||||| || ||||||||||||||||| || ||| |||| ||| ||| |||||||| | ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
13377094 |
agctgagctgcaaaacttacaattaggaggaaaactacacatcagaggccttcagaatgtgtcaaacgaaggggatgctaaagaagctaatttgattgga |
13376995 |
T |
|
| Q |
733 |
aagaaggacttaaatagcttatatttgtcatgggg |
767 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||| |
|
|
| T |
13376994 |
aagaaagacttaaatcacttatatttgtcatgggg |
13376960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 13377962 - 13377811
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
||||||||| |||||||| |||| || || ||||||||||| |||||||| | |||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
13377962 |
catcaatggctttctgtaaaggaaagtaagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattgt |
13377863 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
|| |||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
13377862 |
ccttgaggccatgttttactttttgtgctgtttttcctaaggattttgaaat |
13377811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 572 - 767
Target Start/End: Complemental strand, 8410 - 8215
Alignment:
| Q |
572 |
agttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctata |
671 |
Q |
| |
|
||||||||||||| ||||| || | || |||||| || ||||| | | |||||||||||||||||| |||| |||||||| |||||||||||||| | |
|
|
| T |
8410 |
agttaacttgtctcaaaactttaagcactttcattgtgggtttgaaggcggggtttggtttagcagagttacatgacttacaactaggaggcaagctaca |
8311 |
T |
|
| Q |
672 |
cattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
767 |
Q |
| |
|
||| ||| ||||||||||| ||| ||| ||||||| |||||||||||||||||| || ||||| |||||| |||| || ||||||||||| |
|
|
| T |
8310 |
catcagaggccttgagaatgtatctagtgaatgggatgctaaagaagctaatttgattggtaaaaaggagttaaatcgcttgtacttgtcatgggg |
8215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 9224 - 9073
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
||||||||| |||||||| ||| || ||||||||| ||| | ||||| ||||||||||||||| ||||||||| |||||||| || |||||||| | |
|
|
| T |
9224 |
catcaatggctttctgtaaaggacagtaagttttggagcttatccgaggacaatcctatcatgtctgttttgagactcagctactttaatttgaaattat |
9125 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
| | ||||| |||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
9124 |
cactgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaat |
9073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 4543 - 4392
Alignment:
| Q |
13 |
catcaatggatttctgtactggaaggtgagttttggaatttacctgaggatgatcctatcatgtctgctttgagactaagctacttcaacttgaaattgt |
112 |
Q |
| |
|
||||||||| |||||||| |||| || ||||||||| ||| | ||||| |||||||||||| || ||||||||| |||||||| || || ||||| | |
|
|
| T |
4543 |
catcaatggctttctgtaaaggaaagtaagttttggagcttatccgaggacaatcctatcatgtttgttttgagactcagctactttaatttaaaattat |
4444 |
T |
|
| Q |
113 |
tattaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaat |
164 |
Q |
| |
|
| | ||||| |||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
4443 |
cactgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaat |
4392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 622 - 767
Target Start/End: Complemental strand, 3679 - 3534
Alignment:
| Q |
622 |
gggtttggtttagcagagctacacaacttacaattaggaggcaagctatacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagcta |
721 |
Q |
| |
|
|||||||||||||||||| || | |||||||| ||||||||| |||| |||| |||| ||||||||||| ||| ||| ||||||| |||||||| |
|
|
| T |
3679 |
gggtttggtttagcagagttaaatgacttacaactaggaggcaggctacacatcaaaggccttgagaatgtatctagtgaatgggatgctaaagaagcta |
3580 |
T |
|
| Q |
722 |
atttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
767 |
Q |
| |
|
|||||||||| || ||||| |||||| |||| || ||||||||||| |
|
|
| T |
3579 |
atttgattggtaaaaaggagttaaatcgcttgtacttgtcatgggg |
3534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University