View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_low_10 (Length: 356)
Name: NF18131_low_10
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 36905323 - 36904973
Alignment:
| Q |
1 |
cccaacatgacagcatcaacctgtttcttgccattcaaatcatttctggttttcaatttgacagatccttcagtgttgtttgatccattcagtttcctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36905323 |
cccaacatgacagcatcaacctgtttcttgccattcaaatcatttctggttttcaatttgacagatccttcagtgttgtttgatccattcagtttcctac |
36905224 |
T |
|
| Q |
101 |
aattttgaagattgtgtcccagaactttacaattgactcaaaaaggaggttacttctcatattggatatcaatggatagaatgtacccttcaatttcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36905223 |
aattttgaagattgtgtcccagaactttacaattgactcaaaaaggaggttacttctcatattggatatcaatggatagaatgtacccttcaatttcaac |
36905124 |
T |
|
| Q |
201 |
aaccactgactcaaataattgttcagatagatcaacatctacaagcacccttgcaaagaccccaaatctcctactaagagtagcatcatcaatagcaaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36905123 |
aaccactgactcaaataattgttcagatagatcaacatctacaagcacccttgcaaagaccccaaatcttctactaagagtagcatcatcaatagcaaga |
36905024 |
T |
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| Q |
301 |
ggagtgcctaaaccgaaagcaatctcaaaaagggccgtcttcctccaatat |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36905023 |
ggagtgcctaaaccgaaagcaatctcaaaaagggccgtcttcctccaatat |
36904973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 3249307 - 3249409
Alignment:
| Q |
1 |
cccaacatgacagcatcaacctgtttcttgccattcaaatcatttctggttttcaatttgacagatccttcagtgttgtttgatccattcagtttcctac |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
3249307 |
cccaacatgtcagcatcaacctgtttcttgccattcaaatcatttttggttttcaatttgacaggtccttcagtgttgtttgatccattcaatttcctac |
3249406 |
T |
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| Q |
101 |
aat |
103 |
Q |
| |
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||| |
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| T |
3249407 |
aat |
3249409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 28102680 - 28103028
Alignment:
| Q |
1 |
cccaacatgacagcatcaacctgtttcttgccattcaaatcatttctggttttcaatttgacagatccttcagtgttgtttgatccattcagtttcctac |
100 |
Q |
| |
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|||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
28102680 |
cccaacgtgtcagcatcaacctgtttcttgccactcaaatcatttctggttttcaatttgacaggtccgtcagtgttgtttgatccattcagtttcctac |
28102779 |
T |
|
| Q |
101 |
aattttgaagattgtgtcccagaactttacaattgactcaaaaaggaggttacttctcatattggatatcaatggatagaatgtacccttcaatttcaac |
200 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
28102780 |
aattttgaagattgtgtcccagaacttc-caattgacacaaaaaggaggctgtttctcatattggatatcaatggatagagcgtacccttcagtttcaac |
28102878 |
T |
|
| Q |
201 |
aaccactgactcaaataattgttcagatagatcaacatctacaagcacccttgcaaagaccccaaatctcctactaagagtagcatcatcaatagcaaga |
300 |
Q |
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|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
28102879 |
aaccactgactcaaataattgctcagacagatcaacatctacaagcacccttgcaaagaccccaaatcttctactaagagtag-gtcatcaatagcaaga |
28102977 |
T |
|
| Q |
301 |
ggagtgcctaaaccgaaagcaatctcaaaaagggccgtcttcctccaatat |
351 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
28102978 |
ggagtgcctaaaccataagcaatctcaaaaagggttctcttcctccaatat |
28103028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 263
Target Start/End: Complemental strand, 51523755 - 51523583
Alignment:
| Q |
91 |
agtttcctacaattttgaagattgtgtcccagaactttacaattgactcaaaaaggaggttacttctcatattggatatcaatggatagaatgtaccctt |
190 |
Q |
| |
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|||||| |||||||||| ||| | || |||| |||||||||||| | |||||| | |||| |||||||||||||| |||||| ||| | | |||| |
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| T |
51523755 |
agtttcatacaattttgcagaatatgccccaaaactttacaattagcacaaaaaagtggttgcttctcatattggacatcaataaataaagcatggcctt |
51523656 |
T |
|
| Q |
191 |
caatttcaacaaccactgactcaaataattgttcagatagatcaacatctacaagcacccttgcaaagacccc |
263 |
Q |
| |
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| |||| |||||||| |||||||||| || ||||| || |||||||| ||||| | ||| ||||| ||||| |
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| T |
51523655 |
ctgtttccacaaccacatactcaaataactgctcagaaaggtcaacatccacaagaatcctggcaaaaacccc |
51523583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 14046465 - 14046412
Alignment:
| Q |
261 |
cccaaatctcctactaagagtagcatcatcaatagcaagaggagtgcctaaacc |
314 |
Q |
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||||||||||||| | | |||||||||||||||| |||||| ||||||||||| |
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| T |
14046465 |
cccaaatctcctattctgtgtagcatcatcaatagtaagaggtgtgcctaaacc |
14046412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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