View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_low_11 (Length: 355)
Name: NF18131_low_11
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 5 - 338
Target Start/End: Complemental strand, 49518287 - 49517968
Alignment:
| Q |
5 |
gagagagaagaagtgcaacaaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttccccattttgtcctt |
104 |
Q |
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| T |
49518287 |
gagagaaaagaagtgcaacaaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttccccattttgtcctt |
49518188 |
T |
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| Q |
105 |
ccnnnnnnnaaattttagattatatcccttgagaccagtttctatccccttgtcatcagcaagcaatagttcaagctcttctttgcttgctttgtcaaca |
204 |
Q |
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| T |
49518187 |
cctttttttaaattttagattatatcccttgagaccagtttctatccccttgtcatcaggaagcaatagttcaa--------------gctttgtcaaca |
49518102 |
T |
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| Q |
205 |
gcaaccatatccatgtgttggaggttattatgatctttgtcatttttactcatttgtgctttcttcctcttcttaacacaaggttcctcaatgaggaact |
304 |
Q |
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| T |
49518101 |
gcaaccatatccatgtgttggaggttattatgatctttgtcatttttactcatttgtgctttcttcctcttcttaacacaaggttcctcaatgaggaact |
49518002 |
T |
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| Q |
305 |
catctgcttcttcattagcttgttgatcactatc |
338 |
Q |
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| T |
49518001 |
catctgcttcttcattagcttgttgatcactatc |
49517968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 23 - 338
Target Start/End: Complemental strand, 27747640 - 27747346
Alignment:
| Q |
23 |
caaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttccccattttgtccttccnnnnnnnaaattttag |
122 |
Q |
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| T |
27747640 |
caaaacgtggatcatcactatatgtactgtttggaactttaccctcatcaataataacattctcctttcccattttgtccttcctttttttaaattttag |
27747541 |
T |
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| Q |
123 |
attatatcccttgagaccagtttctatccccttgtcatcagcaagcaatagttcaagctcttctttgcttgctttgtcaacagcaaccatatccatgtgt |
222 |
Q |
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| T |
27747540 |
actatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctcttctttgcttgctttgtcaacagcaactatatcca----- |
27747446 |
T |
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| Q |
223 |
tggaggttattatgatctttgtcatttttactcatttgtgctttcttcctcttcttaacacaaggttcctcaatgaggaactcatctgcttcttcattag |
322 |
Q |
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| T |
27747445 |
----------tatga---ttgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaat---gaactcatttgctgcttcaataa |
27747362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 38527375 - 38527452
Alignment:
| Q |
121 |
agattatatcccttgagaccagtttctatccccttgtcatcagcaagcaatagttcaagctcttctttgcttgctttg |
198 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38527375 |
agattatatcccttgagaccagtacctgtccccttgtcatcagcaagcaacagttcaagctcttctttgcttgctttg |
38527452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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