View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_low_13 (Length: 347)
Name: NF18131_low_13
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 37008613 - 37008932
Alignment:
| Q |
18 |
caaagggcatgtagtacaatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtct |
117 |
Q |
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| T |
37008613 |
caaagggcatgtagtacaatcttagaattgttcacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtct |
37008712 |
T |
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| Q |
118 |
gtatacaatacacattatgagaacttttgaatcgaaattaaggaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagttgat |
217 |
Q |
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| T |
37008713 |
gtatacaatacacattatgagaacttttgaatcgaaattaaggaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagttgat |
37008812 |
T |
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| Q |
218 |
tgaagaaatataaatgttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagattatgtgaggca |
317 |
Q |
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| T |
37008813 |
tgaagaaatataaatgttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagattatgtgaggca |
37008912 |
T |
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| Q |
318 |
tcacatcagaaatacctttg |
337 |
Q |
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| T |
37008913 |
tcacatcagaaatacctttg |
37008932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 37025811 - 37025896
Alignment:
| Q |
34 |
caatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgt |
119 |
Q |
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| T |
37025811 |
caatcttaggattgttcacgtgcatgtcacaatctaagttcaatatgaaaggagcatttgtcatcattccagagactcttgtctgt |
37025896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 37044809 - 37044892
Alignment:
| Q |
35 |
aatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctg |
118 |
Q |
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|||||| | |||||| ||| ||||||||| |||| ||| | |||||| |||||||| |||||||||||||||||||||||||| |
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| T |
37044809 |
aatcttgggattgttcacaaccatgtcacagtctacgttcaacataaaaggagcattggtcatcaatccagagactcttgtctg |
37044892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 37035762 - 37035801
Alignment:
| Q |
278 |
tttggcctcttctctctagatatgtagattatgtgaggca |
317 |
Q |
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| T |
37035762 |
tttggcctcttctctctagatatgtagattaagtgaggca |
37035801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 317
Target Start/End: Original strand, 37026237 - 37026267
Alignment:
| Q |
287 |
ttctctctagatatgtagattatgtgaggca |
317 |
Q |
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| T |
37026237 |
ttctctctagatatgtagattatgtgaggca |
37026267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 17657564 - 17657492
Alignment:
| Q |
234 |
ttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagat |
306 |
Q |
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| T |
17657564 |
ttaccaacacattcatggcaccggctttgaaatgatgtggttgctttggcctcttctctctagatatgtagat |
17657492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 17657721 - 17657647
Alignment:
| Q |
44 |
attgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctg |
118 |
Q |
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| T |
17657721 |
attgtttacaaacatgtcacaatccacgttcaacatgaagggtgcattggtaatcaacccagagactcttgtctg |
17657647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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