View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18131_low_16 (Length: 302)

Name: NF18131_low_16
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18131_low_16
NF18131_low_16
[»] chr3 (1 HSPs)
chr3 (7-302)||(55300175-55300470)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 55300470 - 55300175
Alignment:
Q  7 gcatcaatgacaagagagtaatcggtaagacctttgtagtaaggactactgtggggggatgatgaaacgaggataggtcgcagtgatgaagagatattgt 106  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55300470 gcatcaatgacaagagaataatcggtaagacctttgtagtaaggactactgtggggggatgatgaaaggaggataggtcgcagtgatgaagagatattgt 55300371  T
Q  107 tgttgtcatcctcttggtattcttcatgaggaatagcaagagattgatcggtgagacccttgtagtagggactatcagaagagaggtgagcatgatgagt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  55300370 tgttgtcatcctcttggtattcttcatgaggaatagcaagagattgatcggtaagacccttgtagtagggactatcagaagagaggtgagtatgatgagt 55300271  T
Q  207 catatcatatgagtcaacctctttcttcatccatgatattgatgacaaccaccaatgaccactgttcttcctcctccgtgcggaacgtgacatatt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55300270 catatcatatgagtcaacctctttcttcatccatgatattgatgacaaccaccaatgaccactgttcttcctcctccgtgcggaacgtgacatatt 55300175  T

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