View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18131_low_17 (Length: 284)

Name: NF18131_low_17
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18131_low_17
NF18131_low_17
[»] chr4 (28 HSPs)
chr4 (114-236)||(48864877-48864999)
chr4 (37-230)||(45371122-45371326)
chr4 (162-265)||(48734453-48734556)
chr4 (120-235)||(48871500-48871616)
chr4 (120-235)||(48876804-48876920)
chr4 (69-214)||(48146910-48147066)
chr4 (29-107)||(48853459-48853537)
chr4 (51-210)||(48155562-48155730)
chr4 (120-235)||(48887186-48887302)
chr4 (166-218)||(48160479-48160531)
chr4 (160-263)||(49043325-49043427)
chr4 (121-218)||(47208773-47208870)
chr4 (51-187)||(48170187-48170334)
chr4 (43-107)||(7772965-7773029)
chr4 (22-98)||(48734630-48734706)
chr4 (22-113)||(48899526-48899618)
chr4 (39-116)||(49040378-49040455)
chr4 (132-208)||(43595969-43596045)
chr4 (23-103)||(48871388-48871468)
chr4 (23-103)||(48876692-48876772)
chr4 (41-115)||(45365269-45365343)
chr4 (25-103)||(48887076-48887154)
chr4 (40-105)||(7787475-7787540)
chr4 (26-107)||(48889457-48889538)
chr4 (38-98)||(37826188-37826248)
chr4 (23-115)||(45384080-45384171)
chr4 (69-109)||(47208710-47208750)
chr4 (34-86)||(49058046-49058097)
[»] chr5 (4 HSPs)
chr5 (129-225)||(29697149-29697246)
chr5 (26-225)||(29688921-29689130)
chr5 (167-225)||(29711593-29711651)
chr5 (160-226)||(9120673-9120740)
[»] chr6 (2 HSPs)
chr6 (172-264)||(21017301-21017393)
chr6 (160-218)||(14197230-14197288)
[»] chr1 (4 HSPs)
chr1 (41-100)||(24381868-24381927)
chr1 (163-220)||(24368006-24368064)
chr1 (69-107)||(24341224-24341262)
chr1 (69-107)||(24353589-24353627)
[»] chr8 (2 HSPs)
chr8 (146-235)||(15349806-15349896)
chr8 (23-94)||(4029986-4030057)
[»] chr3 (1 HSPs)
chr3 (185-234)||(11004985-11005034)
[»] chr2 (1 HSPs)
chr2 (23-60)||(29351214-29351251)
[»] chr7 (1 HSPs)
chr7 (38-106)||(48884652-48884720)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 48864877 - 48864999
Alignment:
Q  114 ttatgtatgtgcaactggattgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatc 213  Q
    ||||| ||||| ||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| ||| ||||| | ||||||||||||    
T  48864877 ttatgcatgtgtaactggattgggttctaatgtatgttctgtttgctgcttgaaattgttttatattgtaatttatttgctgaatgtttgcatgttgatc 48864976  T
Q  214 aagatcaaaatcacaattacact 236  Q
    |||||||||||||||||||||||    
T  48864977 aagatcaaaatcacaattacact 48864999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 230
Target Start/End: Complemental strand, 45371326 - 45371122
Alignment:
Q  37 taatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtgatt-----------atgtatgtgc 125  Q
    |||||||||||||||||||||||| | |||||||||||||||| || |||||||  ||||||||| ||||| |||||||           ||| |||||     
T  45371326 taatatgtcatgaaatgtttattgattaattgtttgtaatatgcttcttggaaactttgacaactctgtttgtgtgattcacttttatttatgcatgtgt 45371227  T
Q  126 aactggattgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagatcaaaatc 225  Q
    |  ||||||| ||||||||||||||| || ||  || | |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| |||    
T  45371226 agttggattgagttctaatgtatgttgtgatcactgttagaaattgttttataatgtaatttattttatgaatttatgcatgttgatcaagatcaagatc 45371127  T
Q  226 acaat 230  Q
    |||||    
T  45371126 acaat 45371122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 162 - 265
Target Start/End: Complemental strand, 48734556 - 48734453
Alignment:
Q  162 cttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagatcaaaatcacaattacacttctcttatttaaagcacttcattag 261  Q
    |||||| ||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||     
T  48734556 cttgaatttgttttataccgtaatttatttgatgaatttatgcatgttgatcaagatcaaaatcaccattacactactcttattcaaagcacttcattat 48734457  T
Q  262 aaat 265  Q
    ||||    
T  48734456 aaat 48734453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 235
Target Start/End: Original strand, 48871500 - 48871616
Alignment:
Q  120 atgtgcaactggattgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttag-ttgatgaatttatgcatgttgatcaagat 218  Q
    ||||| || ||||||| | ||||||||||||| |||||  ||||||||||||||||| || |||| |||| ||||| ||||| |||||||| | ||||||    
T  48871500 atgtgtaattggattgagctctaatgtatgttttggtcactgcttgaaattgttttacatggtaaattagtttgataaatttttgcatgttaaacaagat 48871599  T
Q  219 caaaatcacaattacac 235  Q
    |||||||||||||||||    
T  48871600 caaaatcacaattacac 48871616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 235
Target Start/End: Original strand, 48876804 - 48876920
Alignment:
Q  120 atgtgcaactggattgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttag-ttgatgaatttatgcatgttgatcaagat 218  Q
    ||||| || ||||||| | ||||||||||||| |||||  ||||||||||||||||| || |||| |||| ||||| ||||| |||||||| | ||||||    
T  48876804 atgtgtaattggattgagctctaatgtatgttttggtcactgcttgaaattgttttacatggtaaattagtttgataaatttttgcatgttaaacaagat 48876903  T
Q  219 caaaatcacaattacac 235  Q
    |||||||||||||||||    
T  48876904 caaaatcacaattacac 48876920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 48147066 - 48146910
Alignment:
Q  69 tttgtaatatgtttattggaaatgttgacaactttgtttttgtgatt-----------atgtatgtgcaactggattgggttctaatgtatgttctggtc 157  Q
    |||||| ||||||| ||||||||||||||||||||||||  ||||||           ||| ||||| |||||||||| ||||||||||||||| |||||    
T  48147066 tttgtagtatgtttcttggaaatgttgacaactttgtttgcgtgattcagtgttatttatgcatgtgtaactggattgagttctaatgtatgttgtggtc 48146967  T
Q  158 gttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatca 214  Q
      ||| |||||||||| |||||||||||||| || |||| ||| | |||||||||||    
T  48146966 actgcctgaaattgttctatattgtaatttattttatgagtttctacatgttgatca 48146910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 48853459 - 48853537
Alignment:
Q  29 agctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgttt 107  Q
    |||| ||||||||||||||||||||||| |||||||||| | ||| ||||||| |||||||||||| ||||||||||||    
T  48853459 agctgatgtaatatgtcatgaaatgtttgttggtcaattatctgtgatatgttaattggaaatgtttacaactttgttt 48853537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 48155730 - 48155562
Alignment:
Q  51 atgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtgatt-----------atgtatgtgcaactggattgggtt 139  Q
    ||||||||||||||| | |||||| ||||||| ||||  ||||||||| |||||||| |||||||           ||  |||||  ||||||||| |||    
T  48155730 atgtttattggtcaactatttgtagtatgtttgttgggcatgttgacagctttgtttgtgtgattcactgatatttatacatgtgtcactggattgagtt 48155631  T
Q  140 ctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttg 210  Q
    |||||||||||| ||||| ||||||||||||||||||| || ||||||| ||  ||| |||||||||||||    
T  48155630 ctaatgtatgttgtggtcattgcttgaaattgttttattttttaatttattt--tgagtttatgcatgttg 48155562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 235
Target Start/End: Original strand, 48887186 - 48887302
Alignment:
Q  120 atgtgcaactggattgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttagtt-gatgaatttatgcatgttgatcaagat 218  Q
    ||||| || ||||||| | ||||||| ||||| |||||  ||||||||||||||||  || |||| |||||| |||||||||  ||||||| | ||||||    
T  48887186 atgtgtaattggattgagctctaatgcatgttttggtcactgcttgaaattgtttttcatggtaaattagtttgatgaattttagcatgttaaacaagat 48887285  T
Q  219 caaaatcacaattacac 235  Q
    |||||||||||||||||    
T  48887286 caaaatcacaattacac 48887302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 48160531 - 48160479
Alignment:
Q  166 aaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagat 218  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||||||||    
T  48160531 aaattgttttatattgtaattaatttgatgagtttatgcatgttgatcaagat 48160479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 263
Target Start/End: Complemental strand, 49043427 - 49043325
Alignment:
Q  160 tgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagatcaaaatcacaattacacttctcttatttaaagcacttcatt 259  Q
    |||||| ||||||| || ||||||||||| ||||||| ||||||||||||  | ||||||||||| |||| |||||  || | ||| |||||||||||||    
T  49043427 tgcttgtaattgttataaattgtaatttatttgatgagtttatgcatgttactaaagatcaaaattacaaatacac-actttgattcaaagcacttcatt 49043329  T
Q  260 agaa 263  Q
    ||||    
T  49043328 agaa 49043325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 47208773 - 47208870
Alignment:
Q  121 tgtgcaactggattgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagat 218  Q
    |||| |||||||||| || || |||||| || |||||  |  ||||||||||| ||||||| |||||| |||||||||||||||  ||||||||||||    
T  47208773 tgtgtaactggattgagtgctgatgtatattgtggtcactagttgaaattgttctatattgaaatttatttgatgaatttatgcgcgttgatcaagat 47208870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 48170334 - 48170187
Alignment:
Q  51 atgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtga-----------ttatgtatgtgcaactggattgggtt 139  Q
    ||||||||||||||| | |||||| ||||||| || |||| ||||| | |||||||| |||||           ||||| ||||| |||||||||| ||     
T  48170334 atgtttattggtcaactatttgtagtatgtttgtttgaaaggttgatagctttgtttgtgtgattcactgttatttatgcatgtgtaactggattgagtg 48170235  T
Q  140 ctaatgtatgttctggtcgttgcttgaaattgttttatattgtaattt 187  Q
    |||||||||||| |||||  |||| |||||||| ||||||||||||||    
T  48170234 ctaatgtatgttgtggtcactgctagaaattgtattatattgtaattt 48170187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 7773029 - 7772965
Alignment:
Q  43 gtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgttt 107  Q
    |||||| ||||||||||||| |||| ||||| ||| | ||||||||||| |||||||||||||||    
T  7773029 gtcatggaatgtttattggttaattatttgtcataggcttattggaaatattgacaactttgttt 7772965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 48734706 - 48734630
Alignment:
Q  22 tcacatgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgaca 98  Q
    ||||||||||||||| |||| | ||||||||||||||| |||||   |||||||||||||||| | || ||||||||    
T  48734706 tcacatgagctaatgcaataggccatgaaatgtttattagtcaaacatttgtaatatgtttatcgaaattgttgaca 48734630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 48899526 - 48899618
Alignment:
Q  22 tcacatgagctaatgtaatatgtcatgaaatgtttattg-gtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtga 113  Q
    ||||||||||| ||  |||||||||||||||||||||||  ||| |  |||| |||||| ||||||||||| |||||| |||||||| |||||    
T  48899526 tcacatgagctgatccaatatgtcatgaaatgtttattgtttcactattttgcaatatgcttattggaaatattgacagctttgtttgtgtga 48899618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 49040455 - 49040378
Alignment:
Q  39 atatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtgatta 116  Q
    ||||||||  |||||| ||||||| || | | ||||||||| ||||||| ||| ||||||||||||||| ||||||||    
T  49040455 atatgtcacaaaatgtatattggttaactatctgtaatatgcttattggtaatattgacaactttgtttgtgtgatta 49040378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 43596045 - 43595969
Alignment:
Q  132 attgggttctaatgtatgttctggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgt 208  Q
    |||| ||| ||||||||||| |||||  |||| ||||||||||||| |||||||||| || | || |||||||||||    
T  43596045 attgagttttaatgtatgttgtggtcaatgctcgaaattgttttattttgtaatttattttacgagtttatgcatgt 43595969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 48871388 - 48871468
Alignment:
Q  23 cacatgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaacttt 103  Q
    |||||| ||| || |||||||| ||||| ||||||||| | |  | ||| |||||||||||||| ||||||||||||||||    
T  48871388 cacatgtgcttatttaatatgttatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgacaacttt 48871468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 48876692 - 48876772
Alignment:
Q  23 cacatgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaacttt 103  Q
    |||||| ||| || |||||||| ||||| ||||||||| | |  | ||| |||||||||||||| ||||||||||||||||    
T  48876692 cacatgtgcttatttaatatgttatgaactgtttattgcttagctatttataatatgtttattgaaaatgttgacaacttt 48876772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 45365343 - 45365269
Alignment:
Q  41 atgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtgatt 115  Q
    |||||||| ||||||||||||| ||   ||||||||||| ||||||||||  |||| | |||||||| |||||||    
T  45365343 atgtcatgcaatgtttattggttaacaatttgtaatatgcttattggaaacattgatatctttgtttgtgtgatt 45365269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 48887076 - 48887154
Alignment:
Q  25 catgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaacttt 103  Q
    |||||||| || |||||||| ||||| |||| |||| | |  ||||| | |||||||||||| ||||||||||||||||    
T  48887076 catgagcttatttaatatgttatgaactgttaattgcttagctgtttattatatgtttattgaaaatgttgacaacttt 48887154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 7787475 - 7787540
Alignment:
Q  40 tatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgt 105  Q
    |||||||||||||||||||| ||  | ||||||| ||||| |||| | |||| |||||||||||||    
T  7787475 tatgtcatgaaatgtttattcgtttactgtttgtcatatgcttatcgaaaatattgacaactttgt 7787540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 48889457 - 48889538
Alignment:
Q  26 atgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgttt 107  Q
    ||||||| ||||||||||||||||||| |||| | || || | |||||| | |||| |||| |||| |||||| ||||||||    
T  48889457 atgagctgatgtaatatgtcatgaaatatttagttgttaactctttgtagtttgttaattgaaaatattgacagctttgttt 48889538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 37826248 - 37826188
Alignment:
Q  38 aatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgaca 98  Q
    ||||| ||||||||||||||||||| || |||||| |||||| |||||  |||| ||||||    
T  37826248 aatatttcatgaaatgtttattggttaactgtttggaatatgcttattacaaatattgaca 37826188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 45384171 - 45384080
Alignment:
Q  23 cacatgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtgatt 115  Q
    |||||||||| ||  || |||||||| ||||| ||||||| ||   ||||||||||| ||||| ||||| ||||||||| ||||| |||||||    
T  45384171 cacatgagctgatcgaacatgtcatgcaatgtctattggttaacaatttgtaatatgcttatt-gaaatattgacaactctgtttgtgtgatt 45384080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 47208710 - 47208750
Alignment:
Q  69 tttgtaatatgtttattggaaatgttgacaactttgttttt 109  Q
    |||||| ||||||| ||||||||||||||||||| ||||||    
T  47208710 tttgtagtatgtttgttggaaatgttgacaacttggttttt 47208750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 49058097 - 49058046
Alignment:
Q  34 atgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattg 86  Q
    ||||||||||||||||| ||||||||||||||    |||||||||||||||||    
T  49058097 atgtaatatgtcatgaa-tgtttattggtcaaacacttgtaatatgtttattg 49058046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 29697149 - 29697246
Alignment:
Q  129 tggattgggttctaatgtatgt-tctggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagatcaaaatc 225  Q
    |||||||  ||||||||||||| | ||||||||| ||||||||| |||||||||||||| | || ||||  ||||||||||||||||| |||||||||    
T  29697149 tggattgtattctaatgtatgtctgtggtcgttggttgaaattggtttatattgtaattgattttatgatcttatgcatgttgatcaatatcaaaatc 29697246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 29688921 - 29689130
Alignment:
Q  26 atgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtttttgtgat---------ta 116  Q
    ||||||| ||| ||||||||||||||||||||||||||||   |||||| | ||||||||| ||||||||||  |||||||| | ||||         |     
T  29688921 atgagctgatgaaatatgtcatgaaatgtttattggtcaaacatttgtattgtgtttattgaaaatgttgactgctttgtttctatgatgcaatgttgtt 29689020  T
Q  117 tgtatgtgcaactggattgggttctaatgtatgttc-tggtcgttgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaa 215  Q
    |||  ||| |  ||||||| ||||||||| |||||  ||||| ||  ||||||||| |||||||||||||| | || ||||  ||||| |||||||||||    
T  29689021 tgtgcgtgtatatggattgcgttctaatgcatgtttgtggtcattatttgaaattggtttatattgtaattgattttatgatcttatgaatgttgatcaa 29689120  T
Q  216 gatcaaaatc 225  Q
     |||||||||    
T  29689121 tatcaaaatc 29689130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 29711651 - 29711593
Alignment:
Q  167 aattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagatcaaaatc 225  Q
    |||||||||||||| | ||| | ||||||| ||||||||||||||||||||||||||||    
T  29711651 aattgttttatattttcattgatttgatgagtttatgcatgttgatcaagatcaaaatc 29711593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 9120673 - 9120740
Alignment:
Q  160 tgcttgaaattgttttatattgtaatttagt-tgatgaatttatgcatgttgatcaagatcaaaatca 226  Q
    |||||||||||||||||| | |||| ||||| | |||| |||||||||||  ||||||||||||||||    
T  9120673 tgcttgaaattgttttatttggtaaattagtctcatgagtttatgcatgtcaatcaagatcaaaatca 9120740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 21017301 - 21017393
Alignment:
Q  172 ttttatattgtaatttagttgatgaatttatgcatgttgatcaagatcaaaatcacaattacacttctcttatttaaagcacttcattagaaa 264  Q
    ||||||||||||||||| ||||||| ||||||||||||  | |||||||||||||||| |||||  ||||  || |||  |||||||||||||    
T  21017301 ttttatattgtaatttatttgatgagtttatgcatgttactaaagatcaaaatcacaaatacacgactctagttcaaattacttcattagaaa 21017393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 14197288 - 14197230
Alignment:
Q  160 tgcttgaaattgttttatattgtaatttagttgatgaatttatgcatgttgatcaagat 218  Q
    ||||| ||||||||||||||||||||| | ||||||| |||||||||||| ||||||||    
T  14197288 tgcttaaaattgttttatattgtaattaatttgatgagtttatgcatgttcatcaagat 14197230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 24381868 - 24381927
Alignment:
Q  41 atgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaac 100  Q
    |||||||||||||||||||||| || | ||||||| ||||||||||||||| ||||||||    
T  24381868 atgtcatgaaatgtttattggttaactatttgtaacatgtttattggaaatattgacaac 24381927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 24368006 - 24368064
Alignment:
Q  163 ttgaaattgttttatattgtaatttagtt-gatgaatttatgcatgttgatcaagatca 220  Q
    ||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||||||||    
T  24368006 ttgaaattgttttatatggtaaattagtttgatgagtttatccatgttgatcaagatca 24368064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 24341224 - 24341262
Alignment:
Q  69 tttgtaatatgtttattggaaatgttgacaactttgttt 107  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  24341224 tttgtaatatgtttattggaaatattaacaactttgttt 24341262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 24353589 - 24353627
Alignment:
Q  69 tttgtaatatgtttattggaaatgttgacaactttgttt 107  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  24353589 tttgtaatatgtttattggaaatattaacaactttgttt 24353627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 15349806 - 15349896
Alignment:
Q  146 tatgttctggtcgttgcttgaaattgttttatattgtaatttagtt-gatgaatttatgcatgttgatcaagatcaaaatcacaattacac 235  Q
    |||||| |||||| || ||||||| ||||||||| |||| |||||| ||||| ||| ||||| || | |||||||||||||||||||||||    
T  15349806 tatgttttggtcgctgtttgaaatcgttttatatggtaaattagtttgatgagtttttgcatattaaacaagatcaaaatcacaattacac 15349896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 4030057 - 4029986
Alignment:
Q  23 cacatgagctaatgtaatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgtt 94  Q
    ||||| ||||||| |||||| |||||||||| |||||| | |||  |||| ||||||||||||| |||||||    
T  4030057 cacattagctaatttaatatttcatgaaatggttattgattaatcatttggaatatgtttattgaaaatgtt 4029986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 11005034 - 11004985
Alignment:
Q  185 tttagttgatgaatttatgcatgttgatcaagatcaaaatcacaattaca 234  Q
    |||| ||||||| ||| ||||||||||||||||||||||||| |||||||    
T  11005034 tttatttgatgagtttttgcatgttgatcaagatcaaaatcataattaca 11004985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 29351214 - 29351251
Alignment:
Q  23 cacatgagctaatgtaatatgtcatgaaatgtttattg 60  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  29351214 cacatgagctaatgtaatatgtcatgaaatgattattg 29351251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 48884652 - 48884720
Alignment:
Q  38 aatatgtcatgaaatgtttattggtcaattgtttgtaatatgtttattggaaatgttgacaactttgtt 106  Q
    |||||| ||||||||||||| |||| |||| ||| |||| || ||||||||||| |||||| |||||||    
T  48884652 aatatgacatgaaatgtttagtggttaattatttttaatttggttattggaaatattgacagctttgtt 48884720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University