View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_low_2 (Length: 640)
Name: NF18131_low_2
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 539; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 18 - 627
Target Start/End: Complemental strand, 36729138 - 36728528
Alignment:
| Q |
18 |
cataggtgaaccaataactgtgatcttctagtgatcaggaacaatttgtgtacaagaatcatgagatatccatattttgnnnnnnnnttaaaggtgaaac |
117 |
Q |
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| T |
36729138 |
cataggtgaaccaataactgggatcttctagtgatcaggaacaatttgtgtacaagaatcatgagatatccatattttgaaaaaaatttaaaggtgaaac |
36729039 |
T |
|
| Q |
118 |
ataagaagttttggagttatcactaataagaagagccaa-tatagaaccttcatttgagtgtacaggttaccaattcccctcacattccaatatagtacc |
216 |
Q |
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| T |
36729038 |
ataagaagttttggagttatcactaataagaagagccaaatatagaaccttcatttgagtgtacaggttaccaattcccctcacattccaatatagaacc |
36728939 |
T |
|
| Q |
217 |
ttcatttggaactagtggagtggtaaactccccagaaatgggtttgatatcaggcttgtcacctttattccaaatccaaagaccatgaagattaaatttg |
316 |
Q |
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| T |
36728938 |
ttcatttggaactagtggagtggtaaactccccagaaatggatttgatatcaggcttgtcacctttattccaaatccaaagaccatgaagattaaatttg |
36728839 |
T |
|
| Q |
317 |
caatcttccactccttctcctttcaattatgacaaatggtttcagaagatcgtgaggttcaatgtcacaagcattcgcgagagcttgtgcaaaggtgaga |
416 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36728838 |
caatattccactccttctcctttcaattatgacaaatggtttcagaagatcgtgaggttcgatgtcacaagcattcgcgagagcttgtgcaaaggtgaga |
36728739 |
T |
|
| Q |
417 |
gtggctgtgcgattaccagtacgcggagcggatggcggcagagaggccaataaagaccatggcacaatgatagccatggttacttgcgctccaagaaaag |
516 |
Q |
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| T |
36728738 |
gtggctgtgcggttaccagtacgtgcagcggatggcggcagagaggccaataaagaccatggaacaatgatagccatggttacttgcgctccaagaaaag |
36728639 |
T |
|
| Q |
517 |
aaataaaccatggtttcagaattcaaaggattatacatctgccaccattaatgaatcttaaacgtatatatgagaaaaactaaagatataatcgtatctc |
616 |
Q |
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| T |
36728638 |
aaataaaccatggtttcagaattcaaaggattatacatctgccaccattaatgaatctttaacgtatatatgagaaaaactaaagatataatcgtatctc |
36728539 |
T |
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| Q |
617 |
atcacacaggt |
627 |
Q |
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| T |
36728538 |
atcacacaggt |
36728528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 268 - 621
Target Start/End: Complemental strand, 36715262 - 36714914
Alignment:
| Q |
268 |
aggcttgtcacctttattccaaatccaaagaccatgaagattaaatttgcaatcttccactccttctcctttcaattatgacaaatggtttcagaagatc |
367 |
Q |
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| T |
36715262 |
aggcctgtcacctttattcaaaatccaacgaccatgaagaataaattttcaatcttccactcctt------tcaattatgacaaatggtttcagaagatc |
36715169 |
T |
|
| Q |
368 |
gtgaggttcaatgtcacaagcattcgcgagagcttgtgcaaaggtgagagtggctgtgcgattaccagtacgcggagcggatggcggcagagaggccaat |
467 |
Q |
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| T |
36715168 |
gtgaggttcaatgtcacaagcattcgcaagagcttgtgcaaaggtctgagtagttgtgcggttgccaataggcatagcggatggcggcagagaggccaaa |
36715069 |
T |
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| Q |
468 |
aaagaccatggcacaatgatagccatggttacttgcgctccaagaaaagaaat-aaaccatggtttcagaattcaaaggattatacatctgccaccatta |
566 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||| || ||| ||| || |
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| T |
36715068 |
aaagaccatggcacaatgttagccatggttacttgcgctccaagaaaatcaataaaaccatgatttcagaattcaaaggataatatatatgctaccgttt |
36714969 |
T |
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| Q |
567 |
atgaatcttaaacgtatatatgagaaaaactaaagatataatcgtatctcatcac |
621 |
Q |
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| T |
36714968 |
atgagtcttaaacgtatatatgaggaaaactaaagatataatcttatctcatcac |
36714914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 36716001 - 36715899
Alignment:
| Q |
48 |
gtgatcaggaacaatttgtgtacaagaatcatgagatatccatattttgnnnnnnnnttaaaggtgaaacataagaagttttggagttatcactaataag |
147 |
Q |
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||||||| |||||||||||||||||||||||||||| || |||||||| | ||||||||| ||||| |||| ||||||||||||| |||||| |
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| T |
36716001 |
gtgatcataaacaatttgtgtacaagaatcatgagatgtcaatattttg-aaaattttaaaaggtgaagcataacaagtgttggagttatcaccaataag |
36715903 |
T |
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| Q |
148 |
aaga |
151 |
Q |
| |
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|||| |
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| T |
36715902 |
aaga |
36715899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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