View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_low_22 (Length: 239)
Name: NF18131_low_22
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40894722 - 40894942
Alignment:
| Q |
1 |
attattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtggaaatcaacagatgca |
100 |
Q |
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| T |
40894722 |
attattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtggaaatcaacagatgca |
40894821 |
T |
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| Q |
101 |
aatgatgattctgaagatgattagtttgatgatgattctgaaggcaacaccaaaaactcttgcgacattgacaagcgaaaaatgtcacttgatgtataat |
200 |
Q |
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| T |
40894822 |
aatgatgattctgaagatgattagtttgatgatgattctgaaggcaacaccaaaaactcttgcgacattgacaagcgaaaaatgtcacttgatgtataat |
40894921 |
T |
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| Q |
201 |
agtaatagtagatgttcgttt |
221 |
Q |
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| T |
40894922 |
agtaatagtagatgttcgttt |
40894942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 44153573 - 44153441
Alignment:
| Q |
1 |
attattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtggaaatcaacagatgca |
100 |
Q |
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| T |
44153573 |
attattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctctgatgtgccgaagtggaaatcagcagatgcg |
44153474 |
T |
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| Q |
101 |
aatgatgattctgaagatgattagtttgatgat |
133 |
Q |
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| T |
44153473 |
aatgatgattctgaagacgattagtttgatgat |
44153441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 40898301 - 40898079
Alignment:
| Q |
2 |
ttattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagc---tctgatgagcagaagtggaaatcaacagatg |
98 |
Q |
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| T |
40898301 |
ttattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctcttctgatgtgcagaagtggaaatcagcagatg |
40898202 |
T |
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| Q |
99 |
caaatgatgattc------tgaagatgatta---gtttg-atgatgattctgaaggcaacaccaaaaactcttgcgacattgacaagcgaaaaatgtcac |
188 |
Q |
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| T |
40898201 |
caaatgatgattctgtttttggtgctgattatgccttagtttgatgattctgaaggcaaaaccaaaatctcttgcgacaatgacaagcgaaaaatgtc-- |
40898104 |
T |
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| Q |
189 |
ttgatgtataatagtaatagtagatgttc |
217 |
Q |
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| T |
40898103 |
----tgtataatagtaatagtagatgttc |
40898079 |
T |
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