View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_low_25 (Length: 211)
Name: NF18131_low_25
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 11544864 - 11545044
Alignment:
| Q |
14 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctacatggaaatgctatccattcgtgaaatacaaac |
113 |
Q |
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| T |
11544864 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctacatggaaatgctatccattcgtgaaatacaaac |
11544963 |
T |
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| Q |
114 |
taagtaaaactccttttattttaacaaaaacaatgaataa-caagttttcaaaaggtggccaaagtttgaatgggatatat |
193 |
Q |
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| T |
11544964 |
taagtaaaactccttttattttaacaaaaacaatgaataaccaagtttttaaaaggtggccaaagtttgaatgggatatat |
11545044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 34616032 - 34616111
Alignment:
| Q |
14 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctacatggaaatgcta |
93 |
Q |
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| T |
34616032 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaatgcta |
34616111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 34743469 - 34743548
Alignment:
| Q |
14 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctacatggaaatgcta |
93 |
Q |
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| T |
34743469 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaatgcta |
34743548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 34758580 - 34758655
Alignment:
| Q |
14 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctacatggaaat |
89 |
Q |
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| T |
34758580 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaat |
34758655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 34759349 - 34759425
Alignment:
| Q |
118 |
taaaactccttttattttaacaaaaacaatgaataa-caagttttcaaaaggtggccaaagtttgaatgggatatat |
193 |
Q |
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| T |
34759349 |
taaaactccttttattttaacaaaaacaacgaataaccaagtttttaaaaggtggccgaagtttgaatcggatatat |
34759425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 34616165 - 34616243
Alignment:
| Q |
116 |
agtaaaactccttttattttaacaaaaacaatgaataa-caagttttcaaaaggtggccaaagtttgaatgggatatat |
193 |
Q |
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| T |
34616165 |
agtaaaactccttttattttaacaaaaacaactaataaccaaatttttaaaaggtggccgaagtttgaatcagatatat |
34616243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 34743602 - 34743680
Alignment:
| Q |
116 |
agtaaaactccttttattttaacaaaaacaatgaataa-caagttttcaaaaggtggccaaagtttgaatgggatatat |
193 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||| |||||||||| ||||||| |
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| T |
34743602 |
agtaaaactccttttattttaacaaaaacaactaataaccaaatttttaaaaggtggccgaagtttgaatcagatatat |
34743680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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