View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_low_26 (Length: 205)
Name: NF18131_low_26
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_26 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 37097493 - 37097692
Alignment:
| Q |
15 |
aatatacatatacatgagtgacgtagtagtaatttttgctaccttgttcaaaagtgcttgatgatggcaagacttgagaaacaaccaagatgtctccatt |
114 |
Q |
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| T |
37097493 |
aatatacatatacatgagtgacgtagtagtaatttttgctaccttgttcaaaagtgcttgatgatggcaagacttgagaaacaaccaagatgtctccatt |
37097592 |
T |
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| Q |
115 |
gctaagtagac---------ccaaaaatcacatgcattaacgaaatttagaacataggagaatattattgagtgacatgaagataataaatatgagtgta |
205 |
Q |
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| T |
37097593 |
gctaagtagacccaaaaagaccaaaaatcacatgcattaacgaaatttagaacataggagaatattattgagtgacatgaagataataaatatgagtgta |
37097692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 37091177 - 37091260
Alignment:
| Q |
37 |
gtagtagtaatttttgctaccttgttcaaaagtgcttgatgatggcaagacttgagaaacaaccaagatgtctccattgctaag |
120 |
Q |
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| T |
37091177 |
gtagtagtaatttttgttaccttcagaaaaagtgcttgatgatggcaaggcttgagaaacaaccaagatatctcccttgctaag |
37091260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 37091320 - 37091360
Alignment:
| Q |
165 |
gaatattattgagtgacatgaagataataaatatgagtgta |
205 |
Q |
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| T |
37091320 |
gaatattattgagtgatatgaagataataaatatgagtgta |
37091360 |
T |
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