View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_low_3 (Length: 493)
Name: NF18131_low_3
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 33 - 479
Target Start/End: Original strand, 51939375 - 51939818
Alignment:
| Q |
33 |
acacatcatttctagcaccaattcctccaaggactgacatttgaaaaggggataagcagaaaggttaaagttgatccatgaacgaacggaaacactaata |
132 |
Q |
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| T |
51939375 |
acacatcatttctagcaccaattcctccaaggactgacatttgaaaaggggataagcagaaaggttaaagttgatccatgaacgaacggaaacactaata |
51939474 |
T |
|
| Q |
133 |
ttttttactctcttatttgaaatagcagatatccacagattaatatggtaggggtcaaggttttctgaaatatctagagagaatttttggatggttgcac |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51939475 |
ttttttactctcttatttgaaatagcagatatccacagattaatatggtaggggtcaaggttttctgaaatatctagagagaatttttggatggttgcac |
51939574 |
T |
|
| Q |
233 |
tgttgagaagaagaagtaccctacatacaaagtcaatatagcgattttttgcttcctcaaagggaacagaaaaatgaagcaggttgtcactaaagcatag |
332 |
Q |
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| T |
51939575 |
tgttgagaa---gaagtaccctacatacaaagtcaatatagcgattttttgcttcctcaaagggaacagaaaaatgaagcaggttgtcactaaagcatag |
51939671 |
T |
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| Q |
333 |
ttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtgagcaataata |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51939672 |
ttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtgagcaataata |
51939771 |
T |
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| Q |
433 |
cagtcagataggcggcttatgatgtcttgaccctcactggatttctg |
479 |
Q |
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| T |
51939772 |
cagtcagataggcggcttatgatgtcttgaccctcactggatttctg |
51939818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 127 - 476
Target Start/End: Original strand, 51944464 - 51944813
Alignment:
| Q |
127 |
ctaatattttttactctcttatttgaaatagcagatatccacagattaatatggtaggggtcaaggttttctgaaatatctagagagaatttttggatgg |
226 |
Q |
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| T |
51944464 |
ctaataatttttactctcttatttgaaacaacagatatccattgattgatatggtagggatcaaaattatgtagaatatccagagaaaatgtttggatgg |
51944563 |
T |
|
| Q |
227 |
ttgcactgttgagaagaagaagtaccctacatacaaagtcaatatagcgattttttgcttcctcaaagggaacagaaaaatgaagcagg----ttgtcac |
322 |
Q |
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| T |
51944564 |
ttgcagtgttgagattaagcagtaccctatatacaaagttgataaagcgggtttttcttttctcacatag----gtaagatgaagaaggatgattgtaat |
51944659 |
T |
|
| Q |
323 |
taaagcatagttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtg |
422 |
Q |
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||| | ||| | ||||| |||| |||| |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| | |
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| T |
51944660 |
caaaacttaggtctgtgagaaacatccatttgtatatccacctctgtgataaagcaccggtacgaactgcatatttagtaggaagaaaagaaagaatgcg |
51944759 |
T |
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| Q |
423 |
agcaataatacagtcagataggcggcttatgatgtcttgaccctcactggattt |
476 |
Q |
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| T |
51944760 |
accgataacaaagtcaggtaggtcgcttatcatatcttgaccctcactggattt |
51944813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 51944394 - 51944431
Alignment:
| Q |
51 |
caattcctccaaggactgacatttgaaaaggggataag |
88 |
Q |
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| T |
51944394 |
caattcctccaaggactggcatttgaaaagcggataag |
51944431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 329 - 474
Target Start/End: Original strand, 37420356 - 37420501
Alignment:
| Q |
329 |
atagttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtgagcaat |
428 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||||||| |||| || || ||||||| | | || |||||||||| |||||||| ||||| |
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| T |
37420356 |
atagttttgtgacaaacgtccacatgtatatccacctccgtgataaaacacttgtgcggactgcatcttcaatacgaagaaaagaaagaatgtgggcaat |
37420455 |
T |
|
| Q |
429 |
aatacagtcagataggcggcttatgatgtcttgaccctcactggat |
474 |
Q |
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||| || ||| |||| ||||||||| |||||||| |||||||| |
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| T |
37420456 |
gataaagacaggtaggttgcttatgatatcttgaccagcactggat |
37420501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 37420094 - 37420135
Alignment:
| Q |
46 |
agcaccaattcctccaaggactgacatttgaaaaggggataa |
87 |
Q |
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| T |
37420094 |
agcaccaattcctccaaggtctggcatttgaaaatgggataa |
37420135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 418
Target Start/End: Original strand, 34747437 - 34747525
Alignment:
| Q |
330 |
tagttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaa |
418 |
Q |
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| T |
34747437 |
tagttttgtgataaatgtccataggtatatccacctctttgataaaacactggtagaaactgcatccttagtaggaagaaaagaaagaa |
34747525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 466
Target Start/End: Original strand, 34755803 - 34755910
Alignment:
| Q |
359 |
tccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaagagagaatgtgagcaataatacagtcagataggcggcttatgatgtc |
458 |
Q |
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| T |
34755803 |
tccacttctttgataaaacgctagtacgaactgcttccttagtaggaagaaaaaaaagaatgtaaccaataatgtggtcaggtaggttgcttatcaagtc |
34755902 |
T |
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| Q |
459 |
ttgaccct |
466 |
Q |
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| T |
34755903 |
ttgaccct |
34755910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 34751775 - 34751811
Alignment:
| Q |
46 |
agcaccaattcctccaaggactgacatttgaaaaggg |
82 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||||| |
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| T |
34751775 |
agcaccaattcctctaaggactggcatttgaaaaggg |
34751811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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