View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_low_4 (Length: 484)
Name: NF18131_low_4
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 45863926 - 45864385
Alignment:
| Q |
18 |
aaaatactgcaaaaacaactactataaagatgagt--------gcgatttactcatgggaatatactattaacaggcatttttgagactgtaacgcactt |
109 |
Q |
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| T |
45863926 |
aaaatactgcaaaaacaactactataaagatgagtttcactgtgcgatttactcatgggaatatactattaacaggcatttttgagact--aacgcactt |
45864023 |
T |
|
| Q |
110 |
cacgcggggatacaatttaaaagtaacttaaaaatgtttcttatcactataaaatataagctaaataaccgaatcacttcaaagatagacagctaatgaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45864024 |
cacgcggggatacaatttaaaagtaacttaaaaatgtttcttatcactataaaatataagctaaataaccgaatcacttcaaagatagacatctaatgaa |
45864123 |
T |
|
| Q |
210 |
attgtaagtaattgaagaggaatcaaactcacatttgtctcttgaaattcagctccaaaatagccagtggaaacacaaaaacgattgtccaataacaaat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45864124 |
attgtaagtaattgaagaggaatcaaactcacatttgtctcttgaaattcagctccaaaatagccagtggaaacacaaaaacgattgtccaataacaaat |
45864223 |
T |
|
| Q |
310 |
agtaagttacagtaccctgaaataaaattgatggtaataagaagcaatctggcaggcaggtatgtaatgtgaaaatgaatggaacaaacctcattttgca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45864224 |
agtaagttacagtaccctgaaataaaattgatggtaataagaagcaatctggcaggcaggtatgtaatgtgaaaatgaatggaacaaacctcattttgca |
45864323 |
T |
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| Q |
410 |
ccctgttgctaagggactcaatcaattgattcttgtcaaatcccctattaaccacctcctga |
471 |
Q |
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| T |
45864324 |
ccctgttgctaagggactcaatcaattgattcttgtcaaatcccctattaaccacctcctga |
45864385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 119 - 471
Target Start/End: Complemental strand, 17406440 - 17406086
Alignment:
| Q |
119 |
atacaatttaaaagtaacttaaaaatgtttcttatca-ctataaaatataagctaaataaccgaatcacttca---aagatagacagctaatgaaattgt |
214 |
Q |
| |
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|||| |||||||||||| |||||||||| |||||||| |||||| |||||||||||||||| |||| ||||| |||| ||||| || |||||||||| |
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| T |
17406440 |
atacgatttaaaagtaagttaaaaatgtgtcttatcaactataagatataagctaaataactgaattgcttcattaaagacagacaacttatgaaattgt |
17406341 |
T |
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| Q |
215 |
aagtaattgaagaggaatcaaactcacatttgtctcttgaaattcagctccaaaatagccagtggaaacacaaaaacgattgtccaataacaaatagtaa |
314 |
Q |
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| T |
17406340 |
cagtaattgaagagaaaacaaaccgaccattgtctcttgaaactcagctccaagatagccggtggaaacacgataacgattgtccaacaacaaatagtaa |
17406241 |
T |
|
| Q |
315 |
gttacagtaccctgaaataaaattgatggtaataagaagcaatctggcaggcaggtatgtaatgtgaaaatgaatggaacaaacctcattttgcaccctg |
414 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| | | || ||||||||||| ||||||||| ||||| | ||| |
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| T |
17406240 |
gttacagtaccctgaaat-aaattgatagtaataagaagcaatctggaaggcaggtaag-caggtcaaaatgaatggcacaaacctcgttttgtatccta |
17406143 |
T |
|
| Q |
415 |
ttgctaagggactcaatcaattgattcttgtcaaatcccctattaaccacctcctga |
471 |
Q |
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|| |||||||||||| |||| | | | | ||||||||||||||||||||||||||| |
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| T |
17406142 |
ttcttaagggactcaaccaatggttccctttcaaatcccctattaaccacctcctga |
17406086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 196 - 471
Target Start/End: Original strand, 4051315 - 4051600
Alignment:
| Q |
196 |
agacagctaatgaaattgt-aagtaattgaagaggaatcaaactcacatttgtctcttgaaattcagctccaaaatagccagtggaaacacaaaaacgat |
294 |
Q |
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||||| ||||| ||||||| |||||||||||||| || ||||| || ||||||||||||| ||||| || | |||||||||||| |||| | |||| | |
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| T |
4051315 |
agacaactaataaaattgttaagtaattgaagagaaaacaaaccgaccattgtctcttgaaactcagcaccgagatagccagtggagacacgataacggt |
4051414 |
T |
|
| Q |
295 |
tgtccaataacaaatagtaagttacagtaccctgaaataaaattgat---ggtaataagaagcaatctggcaggcaggtatgta-------atgtgaaaa |
384 |
Q |
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| T |
4051415 |
tgtccaataacaaatagtaagtcacggtaccctgaaat-aaattgatgcaggtaataagaagcaatctagcaggcaggtaagtatgtgtctatgtgaaaa |
4051513 |
T |
|
| Q |
385 |
tgaatggaacaaacctcattttgcaccctgttgctaagggactcaatcaattgattcttgtcaaatcccctattaaccacctcctga |
471 |
Q |
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||||| | ||||||||||||||| |||||||| ||||||| |||| |||| | | | | |||||||||||||||||||||||||| |
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| T |
4051514 |
tgaattggacaaacctcattttgtaccctgttcttaagggagtcaaccaatggttccctagcaaatcccctattaaccacctcctga |
4051600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 3576138 - 3576175
Alignment:
| Q |
108 |
ttcacgcggggatacaatttaaaagtaacttaaaaatg |
145 |
Q |
| |
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||||| |||||||||||||||||||||| ||||||||| |
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| T |
3576138 |
ttcacacggggatacaatttaaaagtaagttaaaaatg |
3576175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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