View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_low_5 (Length: 468)
Name: NF18131_low_5
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 33887006 - 33887260
Alignment:
| Q |
13 |
aatatcaaagttgtacctacaaacaacgcagcaaagttgttagttagttagggtttgattctgccactgcacag------ggacagggaatagatcactg |
106 |
Q |
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| T |
33887006 |
aatatcaaagttgtacctacaaacaacgcagtaaagttgttggttagttagggtttgattctgccactgcacagggacagggacagggaatagatcactg |
33887105 |
T |
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| Q |
107 |
ctcacattccgtatcttgtgtcactcatttcaaaataaaagttaaaataatttatagcaggtggtagttttattatattcttacttctcagcaaatctct |
206 |
Q |
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| T |
33887106 |
ctcacattccttatcttgtgtcactcatttcaaaataaaagttaaaataatttatagcaggtggtagttttattatatacttacttctcagcaaatctct |
33887205 |
T |
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| Q |
207 |
tccgctcttccctctcaaaatttgcaaagaattcatcaatctcctcttccctgaa |
261 |
Q |
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| T |
33887206 |
tccgctcttccctctcaaaatttgcaaagaattcatcaatctccgcctccctgaa |
33887260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 33887347 - 33887430
Alignment:
| Q |
367 |
tacctgaacgattttaaattgtggttggttttgtctaccgtttcaaaacacttagttttcagctgcaagatcatcacagtaatt |
450 |
Q |
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| T |
33887347 |
tacctgaacgattttaaattgtggttcgttttgtctaccgtttcaaaacacttagttttcagctgcaagatcatcacagtaatt |
33887430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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