View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_low_7 (Length: 444)
Name: NF18131_low_7
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 96 - 436
Target Start/End: Complemental strand, 29414119 - 29413801
Alignment:
| Q |
96 |
tttaagtattctaaactaagaaagaatgaaaaaatgtagagtaattggtcatgtatatctttttagcagactaacgttattggctcagtatatgacacaa |
195 |
Q |
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| T |
29414119 |
tttaagtattctaaattaagaaagaaaaaaaaaatgtagagtaattggtcatgtatatctttttagcagactaacgttattggctcag------------ |
29414032 |
T |
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| Q |
196 |
caagtgagtgggcgtgacagttgagttagatccgaagtctctgacaccacgcaacacaaacggatatagccggtaacactctcctttaagaacctgctat |
295 |
Q |
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| T |
29414031 |
----------ggcgtgacagttgagttagatccgaagtctctgacaccacgcaacacaaacggatatagccggtaacactctcctttaagaacctgctat |
29413942 |
T |
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| Q |
296 |
atccggtaacatatgaatgaataatcattcaacatcatccataataataatataaaaacaacagtttcaattcaacctcatcgatatacaaacatcgctt |
395 |
Q |
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| T |
29413941 |
atccggtaacatatgaatgaataatcattcaacatcatccataataataatataaaaacaacagtttcaattcaacctcatcgatatacaaacatcgctt |
29413842 |
T |
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| Q |
396 |
ctaaattccacccactacgaagatcgtgtctcgttcatctc |
436 |
Q |
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| T |
29413841 |
ctaaattccacccactacgaagatcgtgtctcgttcatctc |
29413801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 29414620 - 29414568
Alignment:
| Q |
18 |
atttgttagcaaaatcttatgcaatagcttatcaacataactaagttcgcggg |
70 |
Q |
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| T |
29414620 |
atttgttagcaaaatcttatgcaatagcttatcaaccgaactaagctcgcggg |
29414568 |
T |
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