View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18131_low_8 (Length: 421)
Name: NF18131_low_8
Description: NF18131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18131_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 26422429 - 26422043
Alignment:
| Q |
19 |
taaagctcctcactcagaaaaaatttgtgcccatcatcaaaattccagcaactgactcctcccacttgacaccactattctcatatcgcccttttcaatt |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422429 |
taaagctcctcactcagaagaaatttgtgcccatcatcaaaattcccgcaactgactcctcccacttgacaccactattctcatatcgcccttttcaatt |
26422330 |
T |
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| Q |
119 |
ttattcctccccaatattcacttttgtactccagattttagttccacttgcagtttcctttgagttcttttttatccctaaaatattaatctttccctga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26422329 |
ttattcctccccaatattcacttttgtactccagattttagttccacttgcagtttcctttgagttcttttttatccctaaaatattaatctgtccctga |
26422230 |
T |
|
| Q |
219 |
atgtgcatcaccacatgcctgaacttcagctattttctccggctggagtcttaaagtttggaagcatcttctcatatagtctcttctatgaattgtcttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422229 |
atgtgcatcaccacatgcctgaacttcagctattttctccggctggagtcttaaagtttggaagcatcttctcatatagtctcttctatgaattgtcttt |
26422130 |
T |
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| Q |
319 |
cttaatgaataactaacttaggtgttttctccccctgttccacgatatttccagtaatcaattcttttaatgtcattccacacctatgct |
408 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
26422129 |
ctcaatgaataactaactta---gttttctccccctgttccacaatatttccagtaatcaattcttttaatgttattccacacctgtgct |
26422043 |
T |
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