View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18132_high_1 (Length: 1177)

Name: NF18132_high_1
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18132_high_1
NF18132_high_1
[»] chr8 (8 HSPs)
chr8 (500-1156)||(29696048-29696716)
chr8 (19-326)||(29695063-29695370)
chr8 (341-511)||(29695420-29695593)
chr8 (268-336)||(40136948-40137015)
chr8 (287-340)||(22268937-22268990)
chr8 (287-340)||(34778754-34778807)
chr8 (281-333)||(22779681-22779733)
chr8 (268-330)||(26168961-26169023)
[»] chr1 (13 HSPs)
chr1 (268-340)||(30043580-30043653)
chr1 (268-339)||(3234324-3234395)
chr1 (287-340)||(37047004-37047057)
chr1 (282-339)||(45232081-45232138)
chr1 (287-337)||(39964527-39964577)
chr1 (294-340)||(41470621-41470667)
chr1 (268-339)||(39012311-39012382)
chr1 (268-331)||(44417447-44417509)
chr1 (294-340)||(15581152-15581198)
chr1 (279-329)||(47360509-47360559)
chr1 (267-340)||(6127970-6128043)
chr1 (294-339)||(18928352-18928397)
chr1 (268-340)||(36428731-36428804)
[»] chr7 (9 HSPs)
chr7 (280-336)||(21050137-21050193)
chr7 (268-336)||(21035153-21035221)
chr7 (268-340)||(5579218-5579291)
chr7 (284-337)||(33128538-33128591)
chr7 (280-340)||(34634528-34634588)
chr7 (294-340)||(8677582-8677628)
chr7 (268-340)||(13585658-13585731)
chr7 (290-339)||(19612646-19612695)
chr7 (287-340)||(37507016-37507068)
[»] chr4 (14 HSPs)
chr4 (267-338)||(25414198-25414269)
chr4 (287-343)||(42281237-42281293)
chr4 (287-338)||(4686131-4686182)
chr4 (290-331)||(21344845-21344886)
chr4 (287-340)||(38206129-38206182)
chr4 (268-340)||(25434644-25434714)
chr4 (287-331)||(41621728-41621772)
chr4 (297-340)||(29195114-29195157)
chr4 (294-340)||(17701894-17701940)
chr4 (296-338)||(31141356-31141398)
chr4 (294-340)||(37980158-37980204)
chr4 (294-340)||(56409970-56410016)
chr4 (267-324)||(5998671-5998728)
chr4 (294-339)||(32475105-32475150)
[»] chr3 (9 HSPs)
chr3 (290-339)||(35623273-35623322)
chr3 (294-340)||(34844390-34844436)
chr3 (294-340)||(42799758-42799804)
chr3 (268-340)||(44069777-44069850)
chr3 (287-331)||(4252528-4252572)
chr3 (289-336)||(26158834-26158881)
chr3 (284-338)||(28834973-28835027)
chr3 (287-337)||(53167795-53167845)
chr3 (287-340)||(43303777-43303830)
[»] chr5 (6 HSPs)
chr5 (268-340)||(18351758-18351830)
chr5 (268-332)||(32340321-32340385)
chr5 (294-336)||(16172994-16173036)
chr5 (294-336)||(14656654-14656696)
chr5 (298-340)||(19373258-19373300)
chr5 (294-331)||(15485430-15485467)
[»] chr2 (6 HSPs)
chr2 (268-339)||(13747618-13747689)
chr2 (287-340)||(18825360-18825413)
chr2 (287-324)||(43963992-43964029)
chr2 (268-324)||(7250264-7250320)
chr2 (294-340)||(342414-342460)
chr2 (294-331)||(6099529-6099566)
[»] chr6 (2 HSPs)
chr6 (294-337)||(6384013-6384056)
chr6 (294-340)||(6691561-6691607)


Alignment Details
Target: chr8 (Bit Score: 572; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 500 - 1156
Target Start/End: Original strand, 29696048 - 29696716
Alignment:
500 cttaactaagttcttcaattaacacttatcacatgagagcttacggataagttgtttcttcagattgctctcaatcaagaggaacaccaattaagactca 599  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||    
29696048 cttaattaagttcttcaattaacacttatcacatgagagcttatggataagttgtttcttcaaattgctctcaataaagaggaacaccagttaagactca 29696147  T
600 tattgtttggggattcttgcattttgatgttatgtcaaaaattgt------------ttgtttattttccatgaatatcatcccatatcccaattatgga 687  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||||            |||||||||||||| ||||||||||||||||||||||||||||    
29696148 tattggttgtggattcttgcattttgatgttatgttaaaaattgttgtgatgtttgtttgtttattttccacgaatatcatcccatatcccaattatgga 29696247  T
688 tgctttctaatcacttatttctattcagggtaggctataaatggattacgcaattccttgctcttggatgttatgctctactgcttttaccaggctttat 787  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29696248 tgctttctaatcacttatttctattcagggtaggctataaatggattacgcaattccttgctcttggatgttatgctctactgcttttaccaggctttat 29696347  T
788 tcaaggtttgaattcagtgatctatgggataactatcatgtatagtaatcatatgtttacaaattgtgatttgaaaagattagcatctcacatcaatggt 887  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29696348 tcaaggtttgaattcagtgatctatgggataactatcatgtatagtaatcatatgtttacaaattgtgatttgaaaagattagcatctcacatcaatggt 29696447  T
888 ctgttggagaaataagtattttccttctgttttgtagttggatatcaatatttcttctctagtcagatacacagaagtatagtttatggagataaaccac 987  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29696448 ctgttggagaaataagtattttccttctgttttgtagttggatatcaatatttcttctctagtcagatacacagaagtatagtttatggagataaaccac 29696547  T
988 gaaataggtatgctttatttatattttaactctgtattcatggttctaagtactgtaattttgattaatagtatatttcctttgcaggcttgacttgttt 1087  Q
    |||||||||||||||||||||||||||||||||| |||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29696548 gaaataggtatgctttatttatattttaactctgcattcatagtaataagtactgtaattttgattaatagtatatttcctttgcaggcttgacttgttt 29696647  T
1088 ttgcctaaaaatagcgacggaccaaaaccagttgttgctttcattactggtggagcctggattattggg 1156  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
29696648 ttgcctaaaaatagcgacgggccaaaaccagttgttgctttcattactggtggagcctggattattggg 29696716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 29695063 - 29695370
Alignment:
19 agatcttcttttggtcgtgatgttagacatgttgcttctgaaacttttcttgtcactcgtcttgcattgaagatgttgacatatcttgggtatgaaacat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29695063 agatcttcttttggtcgtgatgttagacatgttgcttctgaaacttttcttgtcactcgtcttgcattgaagatgttgacatatcttgggtatgaaacat 29695162  T
119 attctgttatctatctttgtgatctcaat---ttgttatgtctttctttaaacaaaaa-actcggtatttgatccaattactgactgatctgagggacca 214  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| |||||| ||    
29695163 attctgttatctatctttgtgatctcaatttgttgttatgtctttctttaaacaaaaatactcggtatttgatccgatgactgactgatccgagggatca 29695262  T
215 atcccaccgtccaccaacgggtccccaattaaagcagagtgactagctcatgaaaattggcaacgggaggattcaaacatgagaccttgagaggagtaca 314  Q
    ||| |||||||||||||| || || || ||||||    | |||||| ||||||||||||||| | ||||||||||||| ||||||||||||||||| | |    
29695263 atcacaccgtccaccaacagggcctcagttaaag----gcgactagttcatgaaaattggcatctggaggattcaaacttgagaccttgagaggagcata 29695358  T
315 ctccaaggtctc 326  Q
    ||||||||||||    
29695359 ctccaaggtctc 29695370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 341 - 511
Target Start/End: Original strand, 29695420 - 29695593
Alignment:
341 tggattgacttatttgagtttatcatttgacataaacacatgggagactctttgagagaaaatagaaaaa--acttaagtcatggctttttcacaagttg 438  Q
    ||||| ||||||||||||||||||||||| ||||||||| || |||||  ||||| |||| | | |||||  | |||||| ||| |||||||||||||||    
29695420 tggatcgacttatttgagtttatcatttggcataaacacttgtgagaccatttgaaagaacacataaaaacaatttaagttatgactttttcacaagttg 29695519  T
439 gtttcaacttgtttgtataagctctccacgatcgct-atgaaaagaacttatatgataggcacttaactaagtt 511  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||| ||| |||  ||||||| ||||| ||||||    
29695520 gtttcaacttatttgtataagctctccacgatagctaatgaaaacaacatattagataggcgcttaattaagtt 29695593  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 40136948 - 40137015
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacac 336  Q
    ||||||||| |||||| || ||||| ||||||||||||||||| ||||||||||||| |||||| ||||    
40136948 aaattggcaccgggagaat-caaacctgagaccttgagaggagcacactccaaggtcccaagccaacac 40137015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 22268937 - 22268990
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||| ||||||||||||| ||| ||||||||||||| |||||| ||||||||    
22268937 tcaaacttgagaccttgagaagagcacactccaaggtcccaagccaacaccacc 22268990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 34778807 - 34778754
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||| ||||||||||| ||||| ||||| |||||||||||||| ||||||||    
34778807 tcaaacttgagaccttgaaaggagcacactgcaaggtctcaagccaacaccacc 34778754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 22779733 - 22779681
Alignment:
281 gaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagccta 333  Q
    |||||||| ||| ||||||||||||||||| ||| ||||||||| ||||||||    
22779733 gaggattcgaacctgagaccttgagaggagcacattccaaggtcccaagccta 22779681  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 26168961 - 26169023
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagc 330  Q
    ||||||||| | |||||| |||||| ||||||||||||||||| | |||||||| || |||||    
26168961 aaattggcatcaggaggaatcaaacctgagaccttgagaggagcaaactccaagatcccaagc 26169023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 30043580 - 30043653
Alignment:
268 aaattggcaacgggaggatt-caaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||||||  ||||||||| ||||| ||||||||||| || || |||||||||||||||||||||||||||||    
30043580 aaattggcattgggaggatttcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccacc 30043653  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 3234395 - 3234324
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccac 339  Q
    ||||||||| || |||||||| ||| |||||||| |||||||| | ||| ||||||||||||||||||||||    
3234395 aaattggcaccgcgaggattcgaacttgagacctcgagaggagcatacttcaaggtctcaagcctacaccac 3234324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 37047057 - 37047004
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||    
37047057 tcaaacctgagaccttgagaggagcacactccaaggtcccaagccaacaccacc 37047004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 45232138 - 45232081
Alignment:
282 aggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccac 339  Q
    ||||||| || ||||||||||||||||||  ||||||||||||| |||||||||||||    
45232138 aggattcgaatatgagaccttgagaggagcgcactccaaggtcttaagcctacaccac 45232081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 39964577 - 39964527
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacacc 337  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||| |||||    
39964577 tcaaacctgagaccttgagaggagcacactccaaggtcgcaagccaacacc 39964527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 41470621 - 41470667
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||||||||||| | |||||||||||||||||| ||||||||    
41470621 tgagaccttgagaggagcatactccaaggtctcaagccaacaccacc 41470667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 39012382 - 39012311
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccac 339  Q
    ||||||||| || | ||| |||||| | ||||||||||| ||| ||||||||||||| |||||| |||||||    
39012382 aaattggcaccgaggggaatcaaacctaagaccttgagaagagcacactccaaggtcccaagccaacaccac 39012311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 44417447 - 44417509
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcc 331  Q
    ||||||||| |||| ||| |||||| |||||||||||||| || ||||||||||||| ||||||    
44417447 aaattggcaccggg-ggaatcaaacctgagaccttgagagcagcacactccaaggtcccaagcc 44417509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 15581152 - 15581198
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||| ||||||| ||||||||||||| |||||| ||||||||    
15581152 tgagacctttagaggagcacactccaaggtcccaagccaacaccacc 15581198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 47360509 - 47360559
Alignment:
279 gggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaag 329  Q
    |||||||||| ||| ||||| ||||||||||| ||||||||||||| ||||    
47360509 gggaggattcgaacctgagatcttgagaggagcacactccaaggtcccaag 47360559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 6127970 - 6128043
Alignment:
267 aaaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||||||| ||||  || || ||| ||||||||||||||||| || |||||||||| ||| || ||||||||    
6127970 aaaattggcaccggggagaatcgaacttgagaccttgagaggagcacgctccaaggtcccaaaccaacaccacc 6128043  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 18928397 - 18928352
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacaccac 339  Q
    ||||||||||||||||| |||||  ||||||||||||| |||||||    
18928397 tgagaccttgagaggagcacactttaaggtctcaagccaacaccac 18928352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 36428804 - 36428731
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttga-gaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||| ||||  || |||||||||||||||||| |||||| | ||||||||||  |||||| ||||||||    
36428804 aaattggcaccggggagaatcaaacatgagaccttgaggaggagcatactccaaggtaccaagccaacaccacc 36428731  T

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Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 21050137 - 21050193
Alignment:
280 ggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacac 336  Q
    |||||||||  || ||||||||||||||||| |||||||||||||||||||||||||    
21050137 ggaggattcgtacttgagaccttgagaggagcacactccaaggtctcaagcctacac 21050193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 21035153 - 21035221
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacac 336  Q
    ||||||||| | |||||||||  || |||| |||||||||||| ||||||||||||||||||| |||||    
21035153 aaattggcacctggaggattcggacttgagtccttgagaggagcacactccaaggtctcaagcttacac 21035221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 5579218 - 5579291
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttgag-aggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||| ||||  || |||||| |||||||||||| ||||| ||||||||||||| |||||| ||||||||    
5579218 aaattggcaccggggagagtcaaacctgagaccttgaggaggagcacactccaaggtcccaagccaacaccacc 5579291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 33128538 - 33128591
Alignment:
284 gattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacacc 337  Q
    ||||||||| ||||||| ||||||||  |||||||||||||||||| |||||||    
33128538 gattcaaacctgagaccatgagaggatcacactccaaggtctcaaggctacacc 33128591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 340
Target Start/End: Original strand, 34634528 - 34634588
Alignment:
280 ggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||||||  |||||||| |||||||| ||||||  |||||||||||||| ||||||    
34634528 ggaggattcaaatttgagacctagagaggaggacactcttaggtctcaagcctataccacc 34634588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 8677582 - 8677628
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||||| |||||||| || |||| |||||||||||||||||||||    
8677582 tgagacctagagaggagcaccctcctaggtctcaagcctacaccacc 8677628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 13585731 - 13585658
Alignment:
268 aaattggcaacgggaggattc-aaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||| ||| ||||||  |||| || |||||||||||||| | ||||||||||||||| |||||| ||||    
13585731 aaattggcaccggaaggatttgaaacctgcgaccttgagaggagcaaactccaaggtctcaaacctacatcacc 13585658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 19612646 - 19612695
Alignment:
290 aacatgagaccttgagaggagtacactccaaggtctcaagcctacaccac 339  Q
    ||||||||||||||||||||| ||||| |||| || |||||| |||||||    
19612646 aacatgagaccttgagaggagcacacttcaagatcccaagccaacaccac 19612695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 37507068 - 37507016
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||| |||||||||||||| |||||||||||||||| ||||||  |||||||    
37507068 tcaaacttgagaccttgagag-agtacactccaaggtcacaagccatcaccacc 37507016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 338
Target Start/End: Original strand, 25414198 - 25414269
Alignment:
267 aaaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacacca 338  Q
    |||||||||| ||||  || |||||| |||||| |||||||||| |||||||||||||||||||| ||||||    
25414198 aaaattggcaccggggagaatcaaacctgagactttgagaggagcacactccaaggtctcaagccaacacca 25414269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 42281237 - 42281293
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacctgg 343  Q
    |||||| ||||||||||||||||| ||||| ||||||| |||||| |||||||||||    
42281237 tcaaacctgagaccttgagaggagcacactacaaggtcccaagccaacaccacctgg 42281293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 338
Target Start/End: Original strand, 4686131 - 4686182
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacacca 338  Q
    |||||| |||||| |||||||||| |||||||||||||||||||| ||||||    
4686131 tcaaacctgagacattgagaggagcacactccaaggtctcaagccaacacca 4686182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 21344886 - 21344845
Alignment:
290 aacatgagaccttgagaggagtacactccaaggtctcaagcc 331  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
21344886 aacatgagaccttgagaggagcacactccaaggtcccaagcc 21344845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 38206129 - 38206182
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||| ||||||||||||||||| ||||||||||||| ||||||  |||||||    
38206129 tcaaacctgagaccttgagaggagcacactccaaggtcccaagccagcaccacc 38206182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 25434644 - 25434714
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||||||| ||||| || ||||| |||||||||||||| || ||||||||||||| |||||| ||||||||    
25434644 aaattggcaatgggagaat-caaacctgagaccttgagagaagcacactccaaggtcccaagcc-acaccacc 25434714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 41621728 - 41621772
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcc 331  Q
    |||||||||||||||||||||||| | |||||||| |||||||||    
41621728 tcaaacatgagaccttgagaggagcaaactccaagatctcaagcc 41621772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 29195157 - 29195114
Alignment:
297 gaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||||||||||| ||||||||||||| |||||| ||||||||    
29195157 gaccttgagaggagcacactccaaggtcccaagccaacaccacc 29195114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 17701940 - 17701894
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||||||||||| ||| ||||| |||||||||| ||||||||    
17701940 tgagaccttgagaggagcacattccaaagtctcaagccaacaccacc 17701894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 31141356 - 31141398
Alignment:
296 agaccttgagaggagtacactccaaggtctcaagcctacacca 338  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||    
31141356 agaccttgagaggagcacactccaaggtcccaagcttacacca 31141398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 37980158 - 37980204
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||||||||||| ||||||||||||| |||||| ||| ||||    
37980158 tgagaccttgagaggagcacactccaaggtcccaagccaacatcacc 37980204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 56410016 - 56409970
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||||||||||| ||||||||||||| |||||| ||| ||||    
56410016 tgagaccttgagaggagcacactccaaggtcccaagccaacagcacc 56409970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 5998671 - 5998728
Alignment:
267 aaaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtc 324  Q
    ||||||||||   ||||||||| ||  ||||||||||||||||| |||||||||||||    
5998671 aaaattggcacaaggaggattcgaatgtgagaccttgagaggagcacactccaaggtc 5998728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 32475105 - 32475150
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacaccac 339  Q
    |||||||||||||||||| ||||||| |||| |||||| |||||||    
32475105 tgagaccttgagaggagttcactccagggtcccaagccaacaccac 32475150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 35623273 - 35623322
Alignment:
290 aacatgagaccttgagaggagtacactccaaggtctcaagcctacaccac 339  Q
    ||||||||||||||||||||| ||||||||||||| |||||| |||||||    
35623273 aacatgagaccttgagaggagcacactccaaggtcccaagccaacaccac 35623322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 34844436 - 34844390
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||||    
34844436 tgagaccttgagaggagcacactccaaggtctcaagccaacaacacc 34844390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 42799758 - 42799804
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||||||||||| ||||||||||||| |||||| ||||||||    
42799758 tgagaccttgagaggagcacactccaaggtcccaagccaacaccacc 42799804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 44069850 - 44069777
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttga-gaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||| ||| | || |||||| ||||||||||| |||||| |||||||||| ||||||||| ||||||||    
44069850 aaattggcaccggaaagaatcaaacctgagaccttgaggaggagcacactccaagatctcaagccaacaccacc 44069777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 4252528 - 4252572
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcc 331  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||    
4252528 tcaaacttgagaccttgagaggagcacactccaagatctcaagcc 4252572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 26158881 - 26158834
Alignment:
289 aaacatgagaccttgagaggagtacactccaaggtctcaagcctacac 336  Q
    |||| ||||||||||||||||| |||||||||| ||||||||| ||||    
26158881 aaacctgagaccttgagaggagcacactccaagatctcaagccaacac 26158834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 28834973 - 28835027
Alignment:
284 gattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacacca 338  Q
    ||||| ||| ||||||||||||||||  ||||||||||||| |||||| ||||||    
28834973 gattcgaacttgagaccttgagaggaagacactccaaggtcacaagccaacacca 28835027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 53167795 - 53167845
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacacc 337  Q
    |||||| |||||||||||||| || |||||||| ||||||||||| |||||    
53167795 tcaaacttgagaccttgagagaagcacactccatggtctcaagccaacacc 53167845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 43303830 - 43303777
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||| |||||||| |||||||| || |||||||||||||||||  |||||||    
43303830 tcaaacctgagacctggagaggagcacgctccaaggtctcaagccatcaccacc 43303777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 18351758 - 18351830
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||| || || ||||||||| |||||||||||||  || ||||| |||||||||||| ||||||||||    
18351758 aaattggcaccgagaagattcaaacttgagaccttgagacaagcacacttcaaggtctcaagtctacaccacc 18351830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 32340321 - 32340385
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcct 332  Q
    ||||||||| ||| ||||||| ||| | ||||||||||||||| ||||||||||||| |||||||    
32340321 aaattggcatcggtaggattcgaacctaagaccttgagaggagcacactccaaggtcccaagcct 32340385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 16172994 - 16173036
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacac 336  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
16172994 tgagaccttgagaggagcacactccaaggtctcaagccaacac 16173036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 14656654 - 14656696
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacac 336  Q
    ||||||||||||||||| | |||||||||||||||||| ||||    
14656654 tgagaccttgagaggagcaaactccaaggtctcaagccaacac 14656696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 19373300 - 19373258
Alignment:
298 accttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||||||| || |||||||||||||||||||| ||||||||    
19373300 accttgagagtagcacactccaaggtctcaagccaacaccacc 19373258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 15485430 - 15485467
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcc 331  Q
    ||||||||||||||||| ||||||||||||| ||||||    
15485430 tgagaccttgagaggagcacactccaaggtcccaagcc 15485467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 13747618 - 13747689
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccac 339  Q
    |||| |||| |||| |||||||||| |||||||||| |||||| | ||||||||||| |||||| |||||||    
13747618 aaatcggcaccggggggattcaaacctgagaccttgggaggagcatactccaaggtcccaagccaacaccac 13747689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 18825413 - 18825360
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||| ||||||||||||||||| ||||||| ||||| |||||| ||||||||    
18825413 tcaaacttgagaccttgagaggagcacactcctaggtcccaagccaacaccacc 18825360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 43963992 - 43964029
Alignment:
287 tcaaacatgagaccttgagaggagtacactccaaggtc 324  Q
    |||||||||||||||||||||||| |||||||||||||    
43963992 tcaaacatgagaccttgagaggagcacactccaaggtc 43964029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 7250320 - 7250264
Alignment:
268 aaattggcaacgggaggattcaaacatgagaccttgagaggagtacactccaaggtc 324  Q
    ||||||||  |||||||| |||||| ||||| ||||||||||| |||||||||||||    
7250320 aaattggctccgggaggaatcaaacttgagatcttgagaggagcacactccaaggtc 7250264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 342460 - 342414
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    |||||||||| || ||||||||||||||||| |||||| ||||||||    
342460 tgagaccttgcgatgagtacactccaaggtcacaagccaacaccacc 342414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 6099529 - 6099566
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcc 331  Q
    ||||||||||||||||| ||||||||||||| ||||||    
6099529 tgagaccttgagaggagcacactccaaggtcccaagcc 6099566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 6384013 - 6384056
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacacc 337  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||    
6384013 tgagaccttgagaggagcacactccaaggtcccaagccaacacc 6384056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 6691561 - 6691607
Alignment:
294 tgagaccttgagaggagtacactccaaggtctcaagcctacaccacc 340  Q
    ||||||||||||||||| |||||||||||||| ||| | ||||||||    
6691561 tgagaccttgagaggagcacactccaaggtctaaagtcaacaccacc 6691607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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