View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_high_14 (Length: 403)
Name: NF18132_high_14
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 35501219 - 35501594
Alignment:
| Q |
13 |
catcactgaccatttaaatcaacttctccccaattgcgcccgctaacagaaagttgcttctcctttacagttattccaaaggtgttttggaaaaaactgg |
112 |
Q |
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| T |
35501219 |
catcactgaccatttaaatcaacttctccccaattgcgcccactaacagaaagttgcttctcctttacagttattccaaaggtgttttggaaaaaactgg |
35501318 |
T |
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| Q |
113 |
tcaaacttacaacatcctgcaaaatagaaaatatcaacataagaaatgatatgtgatgccaatctaagtcccagtcattaatatctatatctgtcaaaat |
212 |
Q |
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| T |
35501319 |
tcaaacttacaacatcctgcaaaatagaaaatatcaacataagaaatgatatgtgatgccaatctaagtcccagtcattaatatctatatctgtcaaaat |
35501418 |
T |
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| Q |
213 |
gttaatcaaaggaacaaacataagaaaacaaaccagatatttgaattccttagtctacaaatatatgtaattggacattcaggaggggcagaaagtaacc |
312 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35501419 |
gttagtcaaaggaacaaacataagaaaacaaaccagatatttgaattccttagtctacaaatatatgtaattggacattcaggaggggcagaaagtaacc |
35501518 |
T |
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| Q |
313 |
tgatcacgaaatccagtgaatttgtagaacaacccatctttgatctgaacaccaagttgattactctttggaacct |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35501519 |
tgatcacgaaatccagtgaatttgtagaacaacccatctttgatctgaacaccaagttgattactctttggaacct |
35501594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 7070240 - 7070123
Alignment:
| Q |
21 |
accatttaaatcaacttctccccaattgcgcccgctaacagaaagttgcttctcctttacagttattccaaaggtgttttggaaaaaactggtcaaactt |
120 |
Q |
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| T |
7070240 |
accatttagatcaacttctccccaattgcgcccagtaacagaaagttgcttctccccaacagttactccgaaggtgttttggaagaaacttgtcaagctt |
7070141 |
T |
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| Q |
121 |
acaacatcctgcaaaata |
138 |
Q |
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|||||||||| ||||||| |
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| T |
7070140 |
acaacatcctacaaaata |
7070123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 7069935 - 7069857
Alignment:
| Q |
310 |
acctgatcacgaaatccagtgaatttgtagaacaacccatctttgatctgaacaccaagttgattactctttggaacct |
388 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
7069935 |
acctgatcacggaaaccagtgaatttgtagaacaacccatctttgatctgaacaccgagttgatttgtctttggaacct |
7069857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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