View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18132_high_19 (Length: 341)
Name: NF18132_high_19
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_high_19 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 39 - 341
Target Start/End: Original strand, 35500823 - 35501125
Alignment:
| Q |
39 |
ttctattaaacaagctctctctggtatgatgagaaagacggcatgtggctggcaagtcgcaacacaaaaaagaatgagaggaaggtcctttttgagaagc |
138 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35500823 |
ttctattaaacaagctctctctgctatgaagagaaagacggcatgtggctggcaagtggcaacacaaacaagaatgagaggaaggtcctttttgagaagc |
35500922 |
T |
|
| Q |
139 |
caagcaaaccccacctctaccccaaccccaagaaaaaccacaatcttaagtataagatgaatggtatcaactgaatatcttagtagagtgctaccccttg |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35500923 |
caagcaaaccccacctctaccccaaccccaagaaaaaccacaatcttaagtataagatgaatggtatcaactgaatatcttagtagagtgctaccccttg |
35501022 |
T |
|
| Q |
239 |
ctgaaaatatcagcataccatgttcttgtgatgtttacgtgttatacagaacacagtgtgaaatatannnnnnnnctctcaaaacaaattttctcatagt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35501023 |
ctgaaaatatcagcataccatgttcttgtgatgtttacgtgttatacagaacacagtgtgaaatattttttttttctctcaaaacaaattttctcatagt |
35501122 |
T |
|
| Q |
339 |
ata |
341 |
Q |
| |
|
||| |
|
|
| T |
35501123 |
ata |
35501125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University