View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_high_23 (Length: 293)
Name: NF18132_high_23
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 26157600 - 26157324
Alignment:
| Q |
1 |
atacataccggtcatttgaccaacatgagagaaagcatattggaggccatctgccagctggaaagcatcaacattacccaaacggaactgaacattggca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26157600 |
atacataccggtcagttgaccaacatgagagaaagcatattggaggccatctgccagctggaaagcatcaacattacccaaacggaactgaacattggca |
26157501 |
T |
|
| Q |
101 |
tccaccacaagttttgtcaaacgaaggatctcacggcaaaggtgaaaagcattaccaaatcgtgatttcttatgctcttttatagtcaaggttttgacag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26157500 |
tccaccacaagttttgtcaaacgaaggatctcacggcaaagatgaaaagcattaccaaatcgtgatttcttatgctcttttatagtcaaggttttgacag |
26157401 |
T |
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| Q |
201 |
gcattaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtgaattaacagattcaacatattgtac |
277 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26157400 |
gctttaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtgaattaacagattcaacatattgtac |
26157324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 26170898 - 26170622
Alignment:
| Q |
1 |
atacataccggtcatttgaccaacatgagagaaagcatattggaggccatctgccagctggaaagcatcaacattacccaaacggaactgaacattggca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26170898 |
atacataccggtcagttgaccaacatgagagaaagcatattggaggccatctgccagctggaaagcatcaacattacccaaacggaactgaacattggca |
26170799 |
T |
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| Q |
101 |
tccaccacaagttttgtcaaacgaaggatctcacggcaaaggtgaaaagcattaccaaatcgtgatttcttatgctcttttatagtcaaggttttgacag |
200 |
Q |
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| T |
26170798 |
tccaccacaagttttgtcaaacgaaggatctcacggcaaagatgaaaagcattaccaaatcgtgatttcttatgctcttttatagtcaaggttttgacag |
26170699 |
T |
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| Q |
201 |
gcattaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtgaattaacagattcaacatattgtac |
277 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26170698 |
gctttaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtgaattaacagattcaacatattgtac |
26170622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 44783873 - 44784149
Alignment:
| Q |
1 |
atacataccggtcatttgaccaacatgagagaaagcatattggaggccatctgccagctggaaagcatcaacattacccaaacggaactgaacattggca |
100 |
Q |
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|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44783873 |
atacataccggtcaattgaccaacatgagagaaagtatattggaggccatctgccagctggaaagcatcaacgttacccaaacggaactgaacattggca |
44783972 |
T |
|
| Q |
101 |
tccaccacaagttttgtcaaacgaaggatctcacggcaaaggtgaaaagcattaccaaatcgtgatttcttatgctcttttatagtcaaggttttgacag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
44783973 |
tccaccacaagttttgtcaaacgaaggatctcacggcaaagatgaaaagcattaccaaatcgtgatttcttacgctcttttgtagtcaaggttttgacag |
44784072 |
T |
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| Q |
201 |
gcattaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtgaattaacagattcaacatattgtac |
277 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44784073 |
gctttaaattgaaattataatcaaggtgaagatagttcaaatttttcctgtgaattaacagattcaacatattgtac |
44784149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 2896729 - 2896453
Alignment:
| Q |
1 |
atacataccggtcatttgaccaacatgagagaaagcatattggaggccatctgccagctggaaagcatcaacattacccaaacggaactgaacattggca |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||| |
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| T |
2896729 |
atacataccggtcaattgaccaacatgagagaaagtatattggaggccatccgccagctgaaaagcatcaacattacccaagcgatactgaacattggca |
2896630 |
T |
|
| Q |
101 |
tccaccacaagttttgtcaaacgaaggatctcacggcaaaggtgaaaagcattaccaaatcgtgatttcttatgctcttttatagtcaaggttttgacag |
200 |
Q |
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|||||||||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
2896629 |
tccaccacaagtttcgtcaaacgaaggatctcacgacagagatgaaaagcattaccaaatcgtgatttcttacgctcttttgtagtcaaggttttgacag |
2896530 |
T |
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| Q |
201 |
gcattaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtgaattaacagattcaacatattgtac |
277 |
Q |
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|| | ||||| ||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |||||| |
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| T |
2896529 |
gcttcaaattaaaattataatcaaggtgaaggtagttcaaatttttcctgtgtatcaacagattcaacatgttgtac |
2896453 |
T |
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