View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_high_28 (Length: 250)
Name: NF18132_high_28
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 895215 - 894994
Alignment:
| Q |
17 |
acttgtcttcttaccttttctatgcctcgggagctgttccaacatcattttatctcactcttccgaatctcgacgactctatttcctcggaaatagagtt |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
895215 |
acttgtcttcttaccttttctatgcctcaggagctgttccaacatcattttatctcactcttctgaatctcgacgactctatttcctcggaaatagagtt |
895116 |
T |
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| Q |
117 |
cttagaatcagcttatgaaactgtgaatgttccaggtagtatagtcccttaccatatcaaagatattcctgatccacttctatgtgaaagatcaagttta |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
895115 |
cttagagtcagcttatgaaactgtgaatgttccaggtagtatagtcccttaccatatcaaagatattcctgatccacttctatgtgaaagatcaagttta |
895016 |
T |
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| Q |
217 |
gagtacaaatcatttcttgatg |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
895015 |
gagtacaaatcatttcttgatg |
894994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 905433 - 905647
Alignment:
| Q |
22 |
tcttcttaccttttctatgcctcgggagctgttccaacatcattttatctcactcttccgaatctcgacgactctatttcctcggaaatagagttcttag |
121 |
Q |
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|||||||||||||||||||||||||| ||| || || ||||| | |||||||||||||||||||||||||||| ||||||| ||| ||| ||||||| |
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| T |
905433 |
tcttcttaccttttctatgcctcgggtgctctttcattgtcattctttctcactcttccgaatctcgacgactctgtttcctctgaagcagaattcttag |
905532 |
T |
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| Q |
122 |
aatcagcttatgaaactgtgaatgttccaggtagtatagtcccttaccatatcaaagatattcctgatccacttctatgtgaaagatcaagtttagagta |
221 |
Q |
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||||||||||||||||||||||| |||||||| || | |||| | ||||||||||||||||| || | |||||||||||||||||| | || | || |
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| T |
905533 |
aatcagcttatgaaactgtgaatattccaggttgtgtcatcccatttcatatcaaagatattccagaaataattctatgtgaaagatcaaatgtaaatta |
905632 |
T |
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| Q |
222 |
caaatcatttcttga |
236 |
Q |
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|||| ||||||||| |
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| T |
905633 |
caaaatatttcttga |
905647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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