View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_high_5 (Length: 594)
Name: NF18132_high_5
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 46757546 - 46757227
Alignment:
| Q |
18 |
actataactattgcttgctttaaatccttcaggtaacagaaatcttactcctctcctctgcatggccctgcaaaacaggactatataataaataaataca |
117 |
Q |
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| T |
46757546 |
actataactattgcttgctttaaatccttcaggtaacagaaatcttactcctctcctctgcatggccctgcaaaacaggactatataataaataaataca |
46757447 |
T |
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| Q |
118 |
aagaacctaccagggaggcagctattttccactcttcaatatatcattttaaatacctcatattgtcaaaaatgtccttttccttattattcaccatgtt |
217 |
Q |
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| T |
46757446 |
aagaacctaccagggaggcagctattttccactcttcaatatatcattttaaatacctcatattgtcaaaaatgtccttttccttattattcaccatgtt |
46757347 |
T |
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| Q |
218 |
ttacgctacttattttcttctttcccatctgttgtttacatctaactactacaaataataattggttcnnnnnnnnnnnnnctaatacaaataatttgaa |
317 |
Q |
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| T |
46757346 |
ttacgctacttattttcttctttcccatctgttgtttacatctaactactacaaa---taattggttcaaaaacaaaaaaactaatacaaataatttgaa |
46757250 |
T |
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| Q |
318 |
tttcttattgacaattccttcca |
340 |
Q |
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|||||||||||||| |||||||| |
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| T |
46757249 |
tttcttattgacaaatccttcca |
46757227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 380 - 577
Target Start/End: Complemental strand, 46757187 - 46756990
Alignment:
| Q |
380 |
atatatcaaatattgtttcggaccagatggaaacccaatacataatgaattttgcctagaaagttacacgcttagacgcttcattgatgtcctagatact |
479 |
Q |
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| T |
46757187 |
atatatcaaatattgtttcggaccagatggaaacccaatacataatgaattttgcctagaaagttacacacttagacgcttcattgacgtcctagatact |
46757088 |
T |
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| Q |
480 |
aacttaccttcttagcaatcaatcacagtattactaacatcacacagcgattcacgaattatgttgacaatctctcaatgaccttaatggaatttcct |
577 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46757087 |
aacttaccttcttagcaatcaatcacagtattattaacatcacacatcgattcacgaattatgttgacaatctctcaatgactttaatggaatttcct |
46756990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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