View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18132_low_11 (Length: 472)

Name: NF18132_low_11
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18132_low_11
NF18132_low_11
[»] chr6 (15 HSPs)
chr6 (214-462)||(5613648-5613896)
chr6 (1-148)||(5613434-5613581)
chr6 (89-123)||(20381829-20381863)
chr6 (42-74)||(25073314-25073346)
chr6 (42-81)||(4089457-4089496)
chr6 (42-81)||(4464927-4464966)
chr6 (360-443)||(5620753-5620836)
chr6 (363-406)||(22868437-22868480)
chr6 (89-123)||(2502329-2502363)
chr6 (89-123)||(31345334-31345368)
chr6 (89-123)||(33212404-33212438)
chr6 (41-74)||(24379617-24379650)
chr6 (356-440)||(22019613-22019697)
chr6 (358-410)||(29266832-29266884)
chr6 (42-74)||(33677004-33677036)
[»] chr3 (51 HSPs)
chr3 (360-445)||(38108771-38108856)
chr3 (360-460)||(30715873-30715973)
chr3 (361-462)||(55146562-55146663)
chr3 (357-444)||(13928-14015)
chr3 (361-443)||(44846956-44847038)
chr3 (360-436)||(52560281-52560357)
chr3 (360-462)||(52561556-52561657)
chr3 (42-78)||(35283068-35283104)
chr3 (89-123)||(11500185-11500219)
chr3 (359-417)||(23585499-23585557)
chr3 (359-417)||(23600322-23600380)
chr3 (89-123)||(35283171-35283205)
chr3 (89-123)||(36637884-36637918)
chr3 (89-123)||(40674191-40674225)
chr3 (381-443)||(42989823-42989885)
chr3 (89-123)||(46891470-46891504)
chr3 (42-79)||(48444488-48444525)
chr3 (91-123)||(2927930-2927962)
chr3 (361-441)||(18912259-18912339)
chr3 (401-441)||(44810660-44810700)
chr3 (42-81)||(3458346-3458385)
chr3 (92-123)||(7661123-7661154)
chr3 (89-120)||(21494834-21494865)
chr3 (92-123)||(38526240-38526271)
chr3 (356-407)||(42329097-42329148)
chr3 (359-410)||(45031511-45031562)
chr3 (42-81)||(50345707-50345746)
chr3 (361-444)||(51014272-51014355)
chr3 (89-124)||(54089804-54089839)
chr3 (45-79)||(3333848-3333882)
chr3 (42-80)||(3353987-3354025)
chr3 (361-407)||(10036826-10036872)
chr3 (364-410)||(18878733-18878779)
chr3 (89-123)||(19148251-19148285)
chr3 (89-123)||(39966841-39966875)
chr3 (361-443)||(44006395-44006477)
chr3 (361-443)||(45035106-45035188)
chr3 (89-123)||(48370152-48370186)
chr3 (89-123)||(53888571-53888605)
chr3 (361-410)||(18942600-18942649)
chr3 (362-407)||(21196603-21196648)
chr3 (41-78)||(32858810-32858847)
chr3 (358-407)||(34470238-34470287)
chr3 (358-407)||(45266536-45266585)
chr3 (41-78)||(45571007-45571044)
chr3 (359-436)||(51011549-51011625)
chr3 (42-78)||(517695-517731)
chr3 (44-80)||(33909011-33909047)
chr3 (362-462)||(44809788-44809888)
chr3 (359-407)||(46412468-46412516)
chr3 (42-78)||(53888468-53888504)
[»] chr5 (24 HSPs)
chr5 (371-462)||(9042419-9042510)
chr5 (361-462)||(19870452-19870553)
chr5 (359-462)||(23067640-23067743)
chr5 (359-436)||(24169994-24170071)
chr5 (46-81)||(6373123-6373158)
chr5 (89-123)||(1935070-1935104)
chr5 (89-123)||(26018825-26018859)
chr5 (361-443)||(26747694-26747776)
chr5 (90-123)||(25779580-25779613)
chr5 (362-443)||(34394180-34394261)
chr5 (89-121)||(15916967-15916999)
chr5 (363-443)||(34457996-34458076)
chr5 (363-443)||(36759194-36759274)
chr5 (92-123)||(4841672-4841703)
chr5 (89-123)||(3081295-3081329)
chr5 (89-123)||(6373221-6373255)
chr5 (89-123)||(12063949-12063983)
chr5 (361-443)||(43294196-43294278)
chr5 (42-75)||(3081398-3081431)
chr5 (90-123)||(6632733-6632766)
chr5 (361-410)||(10825306-10825355)
chr5 (400-441)||(12075902-12075943)
chr5 (42-74)||(29022600-29022632)
chr5 (91-123)||(35705009-35705041)
[»] chr1 (36 HSPs)
chr1 (359-444)||(38043384-38043469)
chr1 (358-441)||(18239448-18239531)
chr1 (364-443)||(18981486-18981565)
chr1 (42-78)||(17556648-17556684)
chr1 (42-78)||(24436996-24437032)
chr1 (358-417)||(4911551-4911610)
chr1 (361-444)||(50915333-50915416)
chr1 (89-123)||(6538042-6538076)
chr1 (361-443)||(21761277-21761359)
chr1 (89-123)||(35619477-35619511)
chr1 (361-462)||(15291150-15291251)
chr1 (358-407)||(39855423-39855472)
chr1 (41-78)||(41432829-41432866)
chr1 (359-407)||(17684488-17684536)
chr1 (361-445)||(38047431-38047515)
chr1 (42-78)||(49103016-49103052)
chr1 (400-439)||(9887383-9887422)
chr1 (92-123)||(12293899-12293930)
chr1 (92-123)||(17688426-17688457)
chr1 (400-443)||(18982064-18982107)
chr1 (42-81)||(34552147-34552186)
chr1 (89-123)||(2925898-2925932)
chr1 (89-123)||(9861280-9861314)
chr1 (93-123)||(11017689-11017719)
chr1 (89-123)||(43036286-43036320)
chr1 (89-123)||(43530261-43530295)
chr1 (89-123)||(49102935-49102969)
chr1 (119-148)||(5883531-5883560)
chr1 (44-81)||(25561377-25561414)
chr1 (96-143)||(26940684-26940728)
chr1 (359-436)||(31387957-31388034)
chr1 (119-147)||(36385464-36385492)
chr1 (91-123)||(40243449-40243481)
chr1 (42-74)||(42806153-42806185)
chr1 (92-120)||(44545177-44545205)
chr1 (44-76)||(46001549-46001581)
[»] chr4 (47 HSPs)
chr4 (361-456)||(39390885-39390980)
chr4 (360-444)||(22438574-22438658)
chr4 (358-462)||(9981104-9981208)
chr4 (360-462)||(39388409-39388511)
chr4 (356-443)||(43036469-43036556)
chr4 (362-444)||(22436038-22436120)
chr4 (42-78)||(42650617-42650653)
chr4 (42-81)||(21443004-21443043)
chr4 (42-81)||(29576195-29576234)
chr4 (42-81)||(47063674-47063713)
chr4 (89-123)||(28880075-28880109)
chr4 (361-443)||(32715269-32715351)
chr4 (89-123)||(46669908-46669942)
chr4 (89-123)||(48620373-48620407)
chr4 (42-75)||(4442046-4442079)
chr4 (359-440)||(43035765-43035846)
chr4 (42-75)||(46670012-46670045)
chr4 (358-462)||(20855737-20855841)
chr4 (360-444)||(51025988-51026072)
chr4 (42-77)||(9119850-9119885)
chr4 (360-407)||(10466539-10466586)
chr4 (42-81)||(52636742-52636781)
chr4 (89-123)||(11976921-11976955)
chr4 (89-123)||(16535775-16535809)
chr4 (41-75)||(18319739-18319773)
chr4 (41-75)||(18398908-18398942)
chr4 (42-80)||(23902492-23902530)
chr4 (89-123)||(27143262-27143296)
chr4 (44-78)||(30307356-30307390)
chr4 (89-123)||(32648967-32649001)
chr4 (89-123)||(40423036-40423070)
chr4 (361-443)||(40729905-40729987)
chr4 (89-123)||(47063766-47063800)
chr4 (89-123)||(52430538-52430572)
chr4 (42-80)||(52430617-52430655)
chr4 (42-75)||(18396190-18396223)
chr4 (400-441)||(25411667-25411708)
chr4 (89-122)||(31428885-31428918)
chr4 (90-123)||(43167055-43167088)
chr4 (42-78)||(368050-368086)
chr4 (356-444)||(2333821-2333909)
chr4 (359-407)||(12024499-12024547)
chr4 (42-78)||(35959177-35959213)
chr4 (395-443)||(36505759-36505807)
chr4 (359-407)||(45936604-45936652)
chr4 (42-78)||(48620260-48620296)
chr4 (91-123)||(52594589-52594621)
[»] chr7 (42 HSPs)
chr7 (361-462)||(41964764-41964865)
chr7 (361-444)||(43349576-43349658)
chr7 (360-443)||(1299066-1299149)
chr7 (370-453)||(5569315-5569398)
chr7 (42-81)||(7391469-7391508)
chr7 (364-443)||(18792628-18792707)
chr7 (89-123)||(1278022-1278056)
chr7 (388-462)||(3614408-3614482)
chr7 (360-410)||(42013597-42013647)
chr7 (361-438)||(3615322-3615399)
chr7 (358-462)||(46529481-46529585)
chr7 (361-398)||(47868505-47868542)
chr7 (45-81)||(31055359-31055395)
chr7 (358-410)||(42014607-42014659)
chr7 (361-441)||(45075208-45075288)
chr7 (358-410)||(46790692-46790744)
chr7 (360-407)||(2204017-2204064)
chr7 (92-123)||(7391345-7391376)
chr7 (400-439)||(27543718-27543757)
chr7 (360-410)||(1805106-1805156)
chr7 (89-123)||(4787966-4788000)
chr7 (89-123)||(12624337-12624371)
chr7 (357-407)||(17185160-17185210)
chr7 (89-123)||(23019766-23019800)
chr7 (89-123)||(30081452-30081486)
chr7 (93-123)||(33810175-33810205)
chr7 (89-123)||(36845404-36845438)
chr7 (89-123)||(42266970-42267004)
chr7 (358-444)||(42736924-42737010)
chr7 (41-75)||(46611894-46611928)
chr7 (361-443)||(47317782-47317864)
chr7 (42-75)||(30301990-30302023)
chr7 (42-75)||(31180032-31180065)
chr7 (42-74)||(1277919-1277951)
chr7 (365-441)||(10552700-10552776)
chr7 (42-78)||(13697263-13697299)
chr7 (45-81)||(22556761-22556797)
chr7 (41-81)||(24924640-24924680)
chr7 (360-444)||(31594303-31594387)
chr7 (91-123)||(33187810-33187842)
chr7 (360-444)||(43352092-43352176)
chr7 (358-406)||(47863778-47863826)
[»] chr2 (35 HSPs)
chr2 (364-437)||(44070750-44070823)
chr2 (42-81)||(31584826-31584865)
chr2 (44-81)||(9087525-9087562)
chr2 (359-443)||(19507796-19507880)
chr2 (360-443)||(22712185-22712268)
chr2 (360-443)||(31500779-31500862)
chr2 (89-123)||(11522143-11522177)
chr2 (89-123)||(44656713-44656747)
chr2 (358-443)||(31854231-31854316)
chr2 (359-407)||(6978812-6978860)
chr2 (42-81)||(11522240-11522280)
chr2 (42-78)||(15803169-15803205)
chr2 (42-78)||(36870244-36870280)
chr2 (42-74)||(44954064-44954096)
chr2 (360-443)||(2121287-2121370)
chr2 (42-77)||(30072126-30072161)
chr2 (362-441)||(31853667-31853746)
chr2 (42-81)||(39181059-39181098)
chr2 (361-443)||(40614739-40614822)
chr2 (89-148)||(43190487-43190546)
chr2 (361-443)||(2119445-2119527)
chr2 (89-123)||(27987753-27987787)
chr2 (89-123)||(28074286-28074320)
chr2 (361-407)||(31298851-31298897)
chr2 (89-123)||(36870327-36870361)
chr2 (89-123)||(42946687-42946721)
chr2 (89-123)||(44953983-44954017)
chr2 (89-118)||(31584734-31584763)
chr2 (44-81)||(44656809-44656846)
chr2 (89-121)||(4666219-4666251)
chr2 (42-78)||(12941862-12941898)
chr2 (96-148)||(30312354-30312405)
chr2 (361-437)||(31297640-31297716)
chr2 (91-143)||(33318042-33318094)
chr2 (356-440)||(44329721-44329805)
[»] scaffold1043 (1 HSPs)
scaffold1043 (358-443)||(2601-2686)
[»] chr8 (32 HSPs)
chr8 (42-78)||(1839884-1839920)
chr8 (360-420)||(40494100-40494160)
chr8 (42-81)||(5911486-5911525)
chr8 (42-81)||(28416221-28416260)
chr8 (42-77)||(41455238-41455273)
chr8 (89-123)||(41455343-41455377)
chr8 (358-443)||(16583187-16583272)
chr8 (361-441)||(6253584-6253664)
chr8 (89-148)||(11876941-11877011)
chr8 (89-148)||(11891948-11892018)
chr8 (362-410)||(20495563-20495611)
chr8 (89-128)||(1839778-1839817)
chr8 (42-77)||(5858328-5858363)
chr8 (89-124)||(33412170-33412205)
chr8 (92-123)||(34349802-34349833)
chr8 (89-123)||(8948709-8948743)
chr8 (89-123)||(10878745-10878779)
chr8 (44-78)||(12506260-12506294)
chr8 (89-123)||(13865055-13865089)
chr8 (89-123)||(16424222-16424256)
chr8 (89-123)||(28416134-28416168)
chr8 (89-123)||(28517223-28517257)
chr8 (360-410)||(41270333-41270383)
chr8 (360-441)||(6253301-6253382)
chr8 (89-118)||(16024541-16024570)
chr8 (361-406)||(26701829-26701874)
chr8 (90-123)||(32158850-32158883)
chr8 (91-123)||(32239-32271)
chr8 (45-81)||(13406412-13406448)
chr8 (92-120)||(13406514-13406542)
chr8 (42-74)||(31598488-31598520)
chr8 (42-78)||(39193912-39193948)
[»] scaffold0146 (1 HSPs)
scaffold0146 (364-443)||(32324-32402)
[»] scaffold0004 (2 HSPs)
scaffold0004 (361-407)||(130566-130612)
scaffold0004 (359-407)||(127202-127250)
[»] scaffold0688 (1 HSPs)
scaffold0688 (359-444)||(5912-5997)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 214 - 462
Target Start/End: Original strand, 5613648 - 5613896
Alignment:
Q  214 gatatggtcattaatgtaattaaaatgaaactgcaagaattaatgggctactaattcgattacacaaaatgggcttaaagcctataccaacaaaaaatct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5613648 gatatggtcattaatgtaattaaaatgaaactgcaagaattaatgggctactaattcgattacacaaaatgggcttaaagcctataccaacaaaaaatct 5613747  T
Q  314 atttcttgccctcaatttgtgatccttactcccagaaatctctcaaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatattt 413  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  5613748 atttcttgccctcaatttgtgatcctcactcccagaaatctttcaaagaaaattgcttttttgacaaaggaaagttcctattgacccaagtaaaatactt 5613847  T
Q  414 aaatatctccagcggtagttaactaccgttatccaaaccgccggcagtt 462  Q
    ||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  5613848 aaatacccccagcggtagttaactaccattatccaaaccgccggcagtt 5613896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 5613434 - 5613581
Alignment:
Q  1 ttcgatgtaggtctaaatccaatccgtgttgtctcctaaccatttttcttcaaaatataaaaccctcctcatttggggaacnnnnnnntttaatatatgt 100  Q
    ||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  5613434 ttcgatgtaggtctaaatccactgagtgttgtctgctaaccatttttcttcaaaatataaaaccctcctcatttggggaacaaaaaaatttaatatatgt 5613533  T
Q  101 tgttataatattcttaaaattaatcataagtattaatttatcactctc 148  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  5613534 tgttataatattcttaaaattaatcataagtattaatttatccctctc 5613581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 20381863 - 20381829
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  20381863 tttaatatatgttgttataatattcttaaaattaa 20381829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 25073346 - 25073314
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcattt 74  Q
    |||||||||||||||||||||||||||||||||    
T  25073346 atttttcttcaaaatataaaaccctcctcattt 25073314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 4089496 - 4089457
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  4089496 atttttcttcaaaatataaaactctcctcatttgaggaac 4089457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 4464927 - 4464966
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  4464927 atttttcttcaaaatatacaaccttcctcatttggggaac 4464966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 5620836 - 5620753
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||| |||| |||||| ||||| ||||||||||| |||||||| ||  |||||  | ||||||| ||||||| ||||||    
T  5620836 agaaaattgtttttctgacaatgaaaacttcctattgacacaagtaaactacgtaaatgcccccagcggcagttaacaaccgtt 5620753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 22868480 - 22868437
Alignment:
Q  363 aaattgcttttttgacaaagaaaagttcctattgacccaagtaa 406  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||    
T  22868480 aaattgcttttttgacatagaaaacttcctattgacacaagtaa 22868437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 2502363 - 2502329
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||| ||||||||||||||||||||||||    
T  2502363 tttaatatatattgttataatattcttaaaattaa 2502329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 31345368 - 31345334
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  31345368 tttaatctatgttgttataatattcttaaaattaa 31345334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 33212404 - 33212438
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||| |||||||||||||||||||||||||||    
T  33212404 tttaatacatgttgttataatattcttaaaattaa 33212438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 24379617 - 24379650
Alignment:
Q  41 catttttcttcaaaatataaaaccctcctcattt 74  Q
    ||||||||||||||||| ||||||||||||||||    
T  24379617 catttttcttcaaaatacaaaaccctcctcattt 24379650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 440
Target Start/End: Complemental strand, 22019697 - 22019613
Alignment:
Q  356 tcaaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactacc 440  Q
    ||||||||||||| |||||||||| | || | ||||||||| | ||||||||  | | || || |||||||| ||||||||||||    
T  22019697 tcaaagaaaattgtttttttgacataaaatatttcctattggcacaagtaaatgactaaattacctccagcgctagttaactacc 22019613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 29266832 - 29266884
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaata 410  Q
    ||||||||||||||| |||||| |||||||||| ||  ||| |||||||||||    
T  29266832 aaagaaaattgctttcttgacatagaaaagttcataaagacacaagtaaaata 29266884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 33677004 - 33677036
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcattt 74  Q
    |||||||||||||||||||||| ||||||||||    
T  33677004 atttttcttcaaaatataaaactctcctcattt 33677036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 51)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 360 - 445
Target Start/End: Original strand, 38108771 - 38108856
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttat 445  Q
    |||||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  38108771 agaaaattgcttttttgacaataaaaagttcctattgacacaagtaaaatacttaaatacctccagcggtagttaactaccgttat 38108856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 360 - 460
Target Start/End: Original strand, 30715873 - 30715973
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccggca 459  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||||||||  |||||| | ||||||||||||||||||||||||||||| || |||||    
T  30715873 agaaaattgcttttttgacaaatgaaagttcctattgacacaagtaaaatacataaatacccccagcggtagttaactaccgttatccaaagcgtcggca 30715972  T
Q  460 g 460  Q
    |    
T  30715973 g 30715973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 361 - 462
Target Start/End: Original strand, 55146562 - 55146663
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccggcag 460  Q
    ||||||||||||||||| |||| ||||||||||||||| ||| |||||||  |||||| | ||| || ||||||||||||||||| |||| |||||||||    
T  55146562 gaaaattgcttttttgaaaaaggaaagttcctattgacacaattaaaatacataaatacccccaacgatagttaactaccgttattcaaagcgccggcag 55146661  T
Q  461 tt 462  Q
    ||    
T  55146662 tt 55146663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 357 - 444
Target Start/End: Complemental strand, 14015 - 13928
Alignment:
Q  357 caaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    ||||||||||||||||||| |||| ||||  ||||||||||| |||||||||||| | |||  ||||||||| ||||||| |||||||    
T  14015 caaagaaaattgcttttttaacaatgaaactttcctattgacacaagtaaaatatgttaatgcctccagcggcagttaacaaccgtta 13928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 443
Target Start/End: Original strand, 44846956 - 44847038
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||||| |||||  ||||| |||  ||| || ||||||||||| ||||||| ||||||||||||||||||||||||    
T  44846956 gaaaattgcttttctgacattgaaaacttcacattaacacaagtaaaatacttaaatacctccagcggtagttaactaccgtt 44847038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 360 - 436
Target Start/End: Original strand, 52560281 - 52560357
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaac 436  Q
    ||||||||||||||||||||| ||||  ||||||||||| |||||||||||  |||||  ||||||||| |||||||    
T  52560281 agaaaattgcttttttgacaatgaaaccttcctattgacacaagtaaaatacgtaaatgcctccagcggcagttaac 52560357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 462
Target Start/End: Complemental strand, 52561657 - 52561556
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccggca 459  Q
    |||||||||||||| | |||  |||||||||| |||||| |||||||| ||||||||   | ||||||||||||||||| |||| | ||||||| |||||    
T  52561657 agaaaattgcttttctaacattgaaaagttccaattgacacaagtaaattatttaaa-cgccccagcggtagttaactatcgttctgcaaaccggcggca 52561559  T
Q  460 gtt 462  Q
    |||    
T  52561558 gtt 52561556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 35283068 - 35283104
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    |||||||||||||||||||||||||||||||||||||    
T  35283068 atttttcttcaaaatataaaaccctcctcatttgggg 35283104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 11500185 - 11500219
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  11500185 tttaatatatgttgttataatattcttaaaattaa 11500219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 23585557 - 23585499
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaat 417  Q
    ||||||||||||||| |||||||||||| ||| ||||||  ||||||||||||| ||||    
T  23585557 aagaaaattgcttttctgacaaagaaaatttcatattgagacaagtaaaatattaaaat 23585499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 23600380 - 23600322
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaat 417  Q
    ||||||||||||||| |||||||||||| ||| ||||||  ||||||||||||| ||||    
T  23600380 aagaaaattgcttttctgacaaagaaaatttcatattgagacaagtaaaatattaaaat 23600322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 35283171 - 35283205
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  35283171 tttaatatatgttgttataatattcttaaaattaa 35283205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 36637884 - 36637918
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  36637884 tttaatatatgttgttataatattcttaaaattaa 36637918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 40674191 - 40674225
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  40674191 tttaatatatgttgttataatattcttaaaattaa 40674225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 443
Target Start/End: Original strand, 42989823 - 42989885
Alignment:
Q  381 agaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||| ||| ||||||| ||| |||||||||||||||  | |||||||||||||||||||||    
T  42989823 agaaaacttcatattgacacaactaaaatatttaaatactttcagcggtagttaactaccgtt 42989885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 46891470 - 46891504
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  46891470 tttaatatatgttgttataatattcttaaaattaa 46891504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 48444488 - 48444525
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggga 79  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  48444488 atttttcttcaaaatataaaaccttcctcatttgggga 48444525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 2927930 - 2927962
Alignment:
Q  91 taatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||    
T  2927930 taatatatgttgttataatattcttaaaattaa 2927962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 18912339 - 18912259
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccg 441  Q
    ||||||||||||| |||||  ||||| ||| ||||||| ||||||||||| | ||||  |||||||||  |||||||||||    
T  18912339 gaaaattgcttttctgacagtgaaaatttcatattgacacaagtaaaatactaaaatgcctccagcggccgttaactaccg 18912259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 44810700 - 44810660
Alignment:
Q  401 aagtaaaatatttaaatatctccagcggtagttaactaccg 441  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  44810700 aagtaaaatacttaaatacctccagcggtagttaactaccg 44810660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 3458385 - 3458346
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  3458385 atttttcttcaaaatataaaaccgtcctcgtttggggaac 3458346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 123
Target Start/End: Original strand, 7661123 - 7661154
Alignment:
Q  92 aatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||||||||||||||||    
T  7661123 aatatatgttgttataatattcttaaaattaa 7661154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 120
Target Start/End: Complemental strand, 21494865 - 21494834
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaat 120  Q
    ||||||||||||||||||||||||||||||||    
T  21494865 tttaatatatgttgttataatattcttaaaat 21494834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 123
Target Start/End: Original strand, 38526240 - 38526271
Alignment:
Q  92 aatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||||||||||||||||    
T  38526240 aatatatgttgttataatattcttaaaattaa 38526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 42329148 - 42329097
Alignment:
Q  356 tcaaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    |||||||||||||||||| ||||| || ||| ||||||||||| ||||||||    
T  42329148 tcaaagaaaattgcttttctgacataggaaacttcctattgacacaagtaaa 42329097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 45031511 - 45031562
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaata 410  Q
    |||||||||||||||||||||| ||||  ||||||||||| ||| |||||||    
T  45031511 aagaaaattgcttttttgacaatgaaatcttcctattgacacaaataaaata 45031562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 50345746 - 50345707
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  50345746 atttttcttcaaaatataaaacactcctcgtttggggaac 50345707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 444
Target Start/End: Complemental strand, 51014355 - 51014272
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    ||||||||||||| |||||  |||||||||| |||||| |||||||||||  |||||  | ||||||| | |||||| ||||||    
T  51014355 gaaaattgcttttctgacattgaaaagttccaattgacacaagtaaaatacctaaatgcccccagcggcaattaactgccgtta 51014272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 54089839 - 54089804
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaat 124  Q
    ||||||||||||||||||| ||||||||||||||||    
T  54089839 tttaatatatgttgttatagtattcttaaaattaat 54089804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 3333848 - 3333882
Alignment:
Q  45 tttcttcaaaatataaaaccctcctcatttgggga 79  Q
    |||||||||||||| ||||||||||||||||||||    
T  3333848 tttcttcaaaatatgaaaccctcctcatttgggga 3333882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 3353987 - 3354025
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaa 80  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  3353987 atttttcttcaaaatataaaactctcctcgtttggggaa 3354025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 407
Target Start/End: Original strand, 10036826 - 10036872
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    |||||||||||||||||||| ||| | ||||||||||| ||||||||    
T  10036826 gaaaattgcttttttgacaatgaatacttcctattgacacaagtaaa 10036872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 410
Target Start/End: Original strand, 18878733 - 18878779
Alignment:
Q  364 aattgcttttttgacaaagaaaagttcctattgacccaagtaaaata 410  Q
    |||||||||||||| | |||||| ||||||||||| |||||||||||    
T  18878733 aattgcttttttgatatagaaaacttcctattgacgcaagtaaaata 18878779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 19148251 - 19148285
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  19148251 tttaatttatgttgttataatattcttaaaattaa 19148285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 39966875 - 39966841
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||| ||||||||||    
T  39966875 tttaatatatgttgttataatatttttaaaattaa 39966841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 443
Target Start/End: Original strand, 44006395 - 44006477
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||||| |||||  ||||| |||  | ||||  |||||||||| ||||||  | ||||||||||||||||||||||    
T  44006395 gaaaattgcttttctgacattgaaaatttcacaatgacataagtaaaatacttaaatgcccccagcggtagttaactaccgtt 44006477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 443
Target Start/End: Complemental strand, 45035188 - 45035106
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||| ||||| | |||| ||||| ||||||||||| |||||||||||  ||||| || ||||||| | ||||| ||||||    
T  45035188 gaaaattacttttctaacaatgaaaacttcctattgacacaagtaaaatacgtaaatgtccccagcggcaattaacaaccgtt 45035106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 48370186 - 48370152
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  48370186 tttaatttatgttgttataatattcttaaaattaa 48370152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 53888571 - 53888605
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||| |||||||||||||||||||    
T  53888571 tttaatatatgttgtaataatattcttaaaattaa 53888605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 18942600 - 18942649
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaata 410  Q
    |||||||| |||| |||||| ||||| ||||||||||| |||||||||||    
T  18942600 gaaaattgtttttctgacaatgaaaatttcctattgacacaagtaaaata 18942649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 21196648 - 21196603
Alignment:
Q  362 aaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    |||||||||||||||||| |||| | ||||||||||| ||||||||    
T  21196648 aaaattgcttttttgacatagaatacttcctattgacacaagtaaa 21196603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 32858810 - 32858847
Alignment:
Q  41 catttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  32858810 catttttcttcataatataaaatcctcctcatttgggg 32858847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 34470238 - 34470287
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    |||||||||| |||||||||||| ||| | ||||||||||| ||||||||    
T  34470238 aaagaaaatttcttttttgacaatgaatacttcctattgacacaagtaaa 34470287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 45266585 - 45266536
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    ||||||||||||||||||||||  ||| | ||||||||||| ||||||||    
T  45266585 aaagaaaattgcttttttgacattgaatatttcctattgacacaagtaaa 45266536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 45571044 - 45571007
Alignment:
Q  41 catttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  45571044 catttttcttcataatattaaaccctcctcatttgggg 45571007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 436
Target Start/End: Original strand, 51011549 - 51011625
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaac 436  Q
    |||||||||| |||| ||| |||| ||||||||||||||| |||||||||||  |||||| | | | |||||||||||    
T  51011549 aagaaaattg-ttttgtgagaaaggaaagttcctattgacacaagtaaaatacataaataccccaaacggtagttaac 51011625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 517731 - 517695
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  517731 atttttcttcataatacaaaaccctcctcatttgggg 517695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 33909047 - 33909011
Alignment:
Q  44 ttttcttcaaaatataaaaccctcctcatttggggaa 80  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  33909047 ttttcttcataatacaaaaccctcctcatttggggaa 33909011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 462
Target Start/End: Original strand, 44809788 - 44809888
Alignment:
Q  362 aaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccggcagt 461  Q
    ||||||| ||||||||||  ||| | ||||||||||| ||  |||  |||| |||  ||| |||||||||||||||||||||    ||||||||||||||    
T  44809788 aaaattgtttttttgacatggaatacttcctattgacacagataatttattaaaaagtcttcagcggtagttaactaccgttggaaaaaccgccggcagt 44809887  T
Q  462 t 462  Q
    |    
T  44809888 t 44809888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 46412468 - 46412516
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    ||||||||||||||| ||||| |||| | ||||||||||| ||||||||    
T  46412468 aagaaaattgcttttctgacatagaatacttcctattgacacaagtaaa 46412516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 53888468 - 53888504
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    ||||||||||||||||||||||||||||  |||||||    
T  53888468 atttttcttcaaaatataaaaccctccttgtttgggg 53888504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 371 - 462
Target Start/End: Complemental strand, 9042510 - 9042419
Alignment:
Q  371 tttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccggcagtt 462  Q
    |||||||||| ||||  |||||||| || ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||    
T  9042510 tttttgacaatgaaaccttcctattaacacaagtaaaatatttaaatacccccagcggtagttaactaccgttctccaaaccgccggcagtt 9042419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 361 - 462
Target Start/End: Original strand, 19870452 - 19870553
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccggcag 460  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||||||| ||||||| |  | |||||||||||| ||||||||| ||||||||| |||    
T  19870452 gaaaattgcttttttgacaaaggaaagttactattgacacaagtaaaatacttaaataccctccgcggtagttaacaaccgttatctaaaccgccgacag 19870551  T
Q  461 tt 462  Q
    ||    
T  19870552 tt 19870553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 359 - 462
Target Start/End: Complemental strand, 23067743 - 23067640
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccggc 458  Q
    ||||||||||||||| |||||  |||||||||| |||||| |||||||| || |||||   |||||||||||||||||||||||| | |||| |||||||    
T  23067743 aagaaaattgcttttctgacattgaaaagttccaattgacacaagtaaattacttaaacgcctccagcggtagttaactaccgttctgcaaatcgccggc 23067644  T
Q  459 agtt 462  Q
    ||||    
T  23067643 agtt 23067640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 436
Target Start/End: Complemental strand, 24170071 - 24169994
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaac 436  Q
    |||||||||||||| ||||||  || ||||||  |||||| |||||||||||| |||||||| ||||||| |||||||    
T  24170071 aagaaaattgctttcttgacattgataagttcacattgacacaagtaaaatatctaaatatccccagcggcagttaac 24169994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 6373123 - 6373158
Alignment:
Q  46 ttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    ||||||||||||||||||||||||||||||||||||    
T  6373123 ttcttcaaaatataaaaccctcctcatttggggaac 6373158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 1935104 - 1935070
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  1935104 tttaatatatgttgttataatattcttaaaattaa 1935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 26018825 - 26018859
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  26018825 tttaatatatgttgttataatattcttaaaattaa 26018859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 443
Target Start/End: Original strand, 26747694 - 26747776
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||||||||||| || ||| ||||||||||| |||||||  || | |||   ||||||||||||||||| ||||||    
T  26747694 gaaaattgcttttttgacataggaaacttcctattgacacaagtaatttactaaaaagcctccagcggtagttaacaaccgtt 26747776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 25779580 - 25779613
Alignment:
Q  90 ttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||||||||||||||||||    
T  25779580 ttaatatatgttgttataatattcttaaaattaa 25779613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 443
Target Start/End: Complemental strand, 34394261 - 34394180
Alignment:
Q  362 aaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||||||||| |||||| ||||| ||| ||||||| ||||||||||| | |||| || ||||||  ||||||| ||||||    
T  34394261 aaaattgcttttctgacaatgaaaacttcatattgacacaagtaaaataataaaatgtccccagcgacagttaacaaccgtt 34394180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 15916967 - 15916999
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaatt 121  Q
    |||||||||||||||||||||||||||||||||    
T  15916967 tttaatatatgttgttataatattcttaaaatt 15916999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 34457996 - 34458076
Alignment:
Q  363 aaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||| |||||   | ||||||||| | || ||||||||||| ||||||  ||| ||||||||||||||||||||    
T  34457996 aaattgcttttctgacatctataagttcctaataacacaagtaaaatacttaaatggctctagcggtagttaactaccgtt 34458076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 36759274 - 36759194
Alignment:
Q  363 aaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||||||||| | |||| |||  |||||| |||||||||||  | |||  | ||||||||||||||||||||||    
T  36759274 aaattgcttttttgacataaaaaacttcacattgacacaagtaaaatacctgaatgcccccagcggtagttaactaccgtt 36759194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 123
Target Start/End: Complemental strand, 4841703 - 4841672
Alignment:
Q  92 aatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||||||||||||||||    
T  4841703 aatatatgttgttataatattcttaaaattaa 4841672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 3081329 - 3081295
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||| |||||||||||||||||||||    
T  3081329 tttaatatatgttcttataatattcttaaaattaa 3081295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 6373221 - 6373255
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||| ||||||||||||||||    
T  6373221 tttaatatatgttgttatgatattcttaaaattaa 6373255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 12063983 - 12063949
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||| ||||||||||    
T  12063983 tttaatatatgttgttataatatttttaaaattaa 12063949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 443
Target Start/End: Original strand, 43294196 - 43294278
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||||| |||||||||| |||||| ||| ||  ||| |||||||||||  | |||  ||| ||||||||||||||||||||    
T  43294196 gaaaattgtttttttgacatagaaaacttcataaagacacaagtaaaatacgttaatgcctctagcggtagttaactaccgtt 43294278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 3081431 - 3081398
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttg 75  Q
    |||||||||||| |||||||||||||||||||||    
T  3081431 atttttcttcaatatataaaaccctcctcatttg 3081398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 6632733 - 6632766
Alignment:
Q  90 ttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||| |||||||||||||||||||||    
T  6632733 ttaatatatgttattataatattcttaaaattaa 6632766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 10825306 - 10825355
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaata 410  Q
    ||||||||||||| |||||| ||||| ||| ||||||| |||||||||||    
T  10825306 gaaaattgcttttatgacaatgaaaacttcatattgacacaagtaaaata 10825355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 12075902 - 12075943
Alignment:
Q  400 caagtaaaatatttaaatatctccagcggtagttaactaccg 441  Q
    ||||||||||| | ||||| ||||||||||||||||||||||    
T  12075902 caagtaaaatactaaaatacctccagcggtagttaactaccg 12075943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 29022600 - 29022632
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcattt 74  Q
    |||||||||||||||||||||| ||||||||||    
T  29022600 atttttcttcaaaatataaaactctcctcattt 29022632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 35705041 - 35705009
Alignment:
Q  91 taatatatgttgttataatattcttaaaattaa 123  Q
    |||| ||||||||||||||||||||||||||||    
T  35705041 taatctatgttgttataatattcttaaaattaa 35705009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 359 - 444
Target Start/End: Original strand, 38043384 - 38043469
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    ||||||||||||||||||| |||| |||||||||||||||  ||||||||||  |||||| |||||||||||||||||||||||||    
T  38043384 aagaaaattgcttttttgataaaggaaagttcctattgacagaagtaaaatacataaatacctccagcggtagttaactaccgtta 38043469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 441
Target Start/End: Original strand, 18239448 - 18239531
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccg 441  Q
    ||||| |||||||||||||||| |||||| ||||||||||| ||||||||||| | ||||| | ||| ||| ||||||| ||||    
T  18239448 aaagacaattgcttttttgacatagaaaacttcctattgacacaagtaaaatactaaaatacccccaacggcagttaacaaccg 18239531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 443
Target Start/End: Original strand, 18981486 - 18981565
Alignment:
Q  364 aattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||||||||||||| | |||| ||||||  ||| ||||||||||| |||||| || |||||| |||||||||||||||    
T  18981486 aattgcttttttgacataaaaaacttcctaaagacacaagtaaaatacttaaatgtccccagcgatagttaactaccgtt 18981565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 17556648 - 17556684
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    |||||||||||||||||||||||||||||||||||||    
T  17556648 atttttcttcaaaatataaaaccctcctcatttgggg 17556684  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 24437032 - 24436996
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    |||||||||||||||||||||||||||||||||||||    
T  24437032 atttttcttcaaaatataaaaccctcctcatttgggg 24436996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 4911551 - 4911610
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaat 417  Q
    ||||||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||| ||||    
T  4911551 aaagaaaattgtttttttgacaatgaaaacttcatattgacacaagtaaaatattaaaat 4911610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 444
Target Start/End: Complemental strand, 50915416 - 50915333
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    ||||||||||||| |||||  |||||||||| |||||| |||||||||||  ||||   ||||||||| ||||||| |||||||    
T  50915416 gaaaattgcttttctgacattgaaaagttccaattgacacaagtaaaatacctaaaagcctccagcggcagttaacaaccgtta 50915333  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 6538042 - 6538076
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  6538042 tttaatatatgttgttataatattcttaaaattaa 6538076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 443
Target Start/End: Original strand, 21761277 - 21761359
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||||||||||| | |||| |||  ||||||  ||||||||||| |||||  | | ||||||||||||||||||||    
T  21761277 gaaaattgcttttttgacataaaaaacttcacattgacaaaagtaaaatatctaaatgcccctagcggtagttaactaccgtt 21761359  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 35619511 - 35619477
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  35619511 tttaatatatgttgttataatattcttaaaattaa 35619477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 462
Target Start/End: Original strand, 15291150 - 15291251
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccggcag 460  Q
    ||||||| |||||||| ||  |||||||||| | |||| |||||||| || |||||   | ||| |||||||||||||||||| | |||||||||| |||    
T  15291150 gaaaatttcttttttggcattgaaaagttccaagtgacacaagtaaattacttaaacgcccccaacggtagttaactaccgttctgcaaaccgccgacag 15291249  T
Q  461 tt 462  Q
    ||    
T  15291250 tt 15291251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 39855423 - 39855472
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    ||||||||||||||||||||||| ||| | ||||||||||| ||||||||    
T  39855423 aaagaaaattgcttttttgacaatgaatacttcctattgacacaagtaaa 39855472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 41432866 - 41432829
Alignment:
Q  41 catttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    |||||||||||| |||||||||||||||||||||||||    
T  41432866 catttttcttcataatataaaaccctcctcatttgggg 41432829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 17684488 - 17684536
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    |||||||||||||||||||||| ||| | ||||||||||| ||||||||    
T  17684488 aagaaaattgcttttttgacaatgaatacttcctattgacacaagtaaa 17684536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 445
Target Start/End: Complemental strand, 38047515 - 38047431
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttat 445  Q
    ||||||||||||| |||||  |||||||| | |||||| |||||||||||  |||||| | ||||||| |||| ||| |||||||    
T  38047515 gaaaattgcttttctgacattgaaaagtttcaattgacacaagtaaaatacctaaatacccccagcggcagttgactgccgttat 38047431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 49103052 - 49103016
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    |||||||||||||| ||||||||||||||||||||||    
T  49103052 atttttcttcaaaacataaaaccctcctcatttgggg 49103016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 439
Target Start/End: Original strand, 9887383 - 9887422
Alignment:
Q  400 caagtaaaatatttaaatatctccagcggtagttaactac 439  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  9887383 caagtaaaatattaaaatatcttcagcggtagttaactac 9887422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 123
Target Start/End: Original strand, 12293899 - 12293930
Alignment:
Q  92 aatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||||||||||||||||    
T  12293899 aatatatgttgttataatattcttaaaattaa 12293930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 123
Target Start/End: Original strand, 17688426 - 17688457
Alignment:
Q  92 aatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||||||||||||||||    
T  17688426 aatatatgttgttataatattcttaaaattaa 17688457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 443
Target Start/End: Complemental strand, 18982107 - 18982064
Alignment:
Q  400 caagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||||| |||||||||| || ||||||||||||||||    
T  18982107 caagtaaaatattgaaatatctcccgcagtagttaactaccgtt 18982064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 34552186 - 34552147
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  34552186 atttttctttaaaatataaaaccctcctcatttgaggaac 34552147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 2925932 - 2925898
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  2925932 tttaatctatgttgttataatattcttaaaattaa 2925898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 9861314 - 9861280
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||| ||||||||||    
T  9861314 tttaatatatgttgttataatatttttaaaattaa 9861280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 123
Target Start/End: Original strand, 11017689 - 11017719
Alignment:
Q  93 atatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||    
T  11017689 atatatgttgttataatattcttaaaattaa 11017719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 43036320 - 43036286
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  43036320 tttaatctatgttgttataatattcttaaaattaa 43036286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 43530295 - 43530261
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||| ||||||||||||    
T  43530295 tttaatatatgttgttataatactcttaaaattaa 43530261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 49102969 - 49102935
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||| ||||||||||||||||||||    
T  49102969 tttaatatatgttgctataatattcttaaaattaa 49102935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 148
Target Start/End: Complemental strand, 5883560 - 5883531
Alignment:
Q  119 attaatcataagtattaatttatcactctc 148  Q
    ||||||||||||||||||||||||||||||    
T  5883560 attaatcataagtattaatttatcactctc 5883531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 25561414 - 25561377
Alignment:
Q  44 ttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    ||||||||||||||||||||| || |||||||||||||    
T  25561414 ttttcttcaaaatataaaaccatcgtcatttggggaac 25561377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 26940684 - 26940728
Alignment:
Q  96 tatgttgttataatattcttaaaattaatcataagtattaatttatca 143  Q
    ||||||||||||||||||||   ||||||||||||||||| |||||||    
T  26940684 tatgttgttataatattctt---attaatcataagtattagtttatca 26940728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 436
Target Start/End: Complemental strand, 31388034 - 31387957
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaac 436  Q
    ||||||||||||||| ||| || ||||| ||| |||||||  |||||||||| | ||||  ||||||||| |||||||    
T  31388034 aagaaaattgcttttatgataatgaaaatttcatattgacataagtaaaatactaaaatgcctccagcggcagttaac 31387957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 36385464 - 36385492
Alignment:
Q  119 attaatcataagtattaatttatcactct 147  Q
    |||||||||||||||||||||||||||||    
T  36385464 attaatcataagtattaatttatcactct 36385492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 40243449 - 40243481
Alignment:
Q  91 taatatatgttgttataatattcttaaaattaa 123  Q
    |||| ||||||||||||||||||||||||||||    
T  40243449 taatctatgttgttataatattcttaaaattaa 40243481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 42806153 - 42806185
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcattt 74  Q
    ||||||||||||||||||||||||| |||||||    
T  42806153 atttttcttcaaaatataaaacccttctcattt 42806185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 44545205 - 44545177
Alignment:
Q  92 aatatatgttgttataatattcttaaaat 120  Q
    |||||||||||||||||||||||||||||    
T  44545205 aatatatgttgttataatattcttaaaat 44545177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 46001549 - 46001581
Alignment:
Q  44 ttttcttcaaaatataaaaccctcctcatttgg 76  Q
    ||||||||| |||||||||||||||||||||||    
T  46001549 ttttcttcataatataaaaccctcctcatttgg 46001581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 361 - 456
Target Start/End: Complemental strand, 39390980 - 39390885
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccg 456  Q
    ||||||||||||||||| |||| |||||||||||| || ||| ||||||| ||||||| | | ||||||||||||| |||||||||||||||||||    
T  39390980 gaaaattgcttttttgataaaggaaagttcctattaacacaaataaaatacttaaatacccctagcggtagttaacaaccgttatccaaaccgccg 39390885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 360 - 444
Target Start/End: Complemental strand, 22438658 - 22438574
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||||||  |||||| | ||||||||||||||||| |||||    
T  22438658 agaaaattgcttttttgacaaaggaatgttcctattgacacaagtaaaatacataaatacccccagcggtagttaactatcgtta 22438574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 358 - 462
Target Start/End: Original strand, 9981104 - 9981208
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccgg 457  Q
    ||||||||||||||||||||||| ||| | ||||||||||| |||||||||||  |||||  || ||||||||||||| ||||||  | ||||||| |||    
T  9981104 aaagaaaattgcttttttgacaaggaatacttcctattgacacaagtaaaatacgtaaatgccttcagcggtagttaattaccgtcctgcaaaccggcgg 9981203  T
Q  458 cagtt 462  Q
    |||||    
T  9981204 cagtt 9981208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 462
Target Start/End: Original strand, 39388409 - 39388511
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccggca 459  Q
    |||||||||||||||| |||  |||||||||| |||||| |||||||| || ||||||   ||||||| |||||||| |||||| | |||||||||||||    
T  39388409 agaaaattgcttttttaacattgaaaagttccaattgacacaagtaaattacttaaatgcttccagcgatagttaaccaccgttctgcaaaccgccggca 39388508  T
Q  460 gtt 462  Q
    |||    
T  39388509 gtt 39388511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 443
Target Start/End: Complemental strand, 43036556 - 43036469
Alignment:
Q  356 tcaaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||||||||||||||||||||| | |||| |||  | |||| ||||||||||| ||||||  | | ||||||||||||||||||||    
T  43036556 tcaaagaaaattgcttttttgacataaaaaacttcacaatgacacaagtaaaatacttaaatgcccctagcggtagttaactaccgtt 43036469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 362 - 444
Target Start/End: Original strand, 22436038 - 22436120
Alignment:
Q  362 aaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    |||||||||||| |||||  |||||||||| || ||| ||||||||||| ||||||  ||||||||| |||||||| ||||||    
T  22436038 aaaattgcttttctgacattgaaaagttccaatcgacacaagtaaaatacttaaatgcctccagcggcagttaactgccgtta 22436120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 42650617 - 42650653
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    |||||||||||||||||||||||||||||||||||||    
T  42650617 atttttcttcaaaatataaaaccctcctcatttgggg 42650653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 21443004 - 21443043
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  21443004 atttttcttcaaaatataaaaccctcctcatttgaggaac 21443043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 29576234 - 29576195
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  29576234 atttttcttcaaaatataaaacgctcctcatttggggaac 29576195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 47063674 - 47063713
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  47063674 atttttctttaaaatataaaaccctcctcatttggggaac 47063713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 28880075 - 28880109
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  28880075 tttaatatatgttgttataatattcttaaaattaa 28880109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 443
Target Start/End: Original strand, 32715269 - 32715351
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||||||||||| || ||| ||||||||||| ||| |||  || | |||   ||||||||||||||||||||||||    
T  32715269 gaaaattgcttttttgacataggaaacttcctattgacacaaataatttactaaaaagcctccagcggtagttaactaccgtt 32715351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 46669942 - 46669908
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  46669942 tttaatatatgttgttataatattcttaaaattaa 46669908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 48620373 - 48620407
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  48620373 tttaatatatgttgttataatattcttaaaattaa 48620407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 4442079 - 4442046
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttg 75  Q
    ||||||||||||||||||||||||||||||||||    
T  4442079 atttttcttcaaaatataaaaccctcctcatttg 4442046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 440
Target Start/End: Original strand, 43035765 - 43035846
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactacc 440  Q
    ||||||||||||||| |||||  || ||||||  |||||| |||||||||||  ||||| || || ||||||||||||||||    
T  43035765 aagaaaattgcttttctgacattgataagttcacattgacacaagtaaaatacctaaatgtccccggcggtagttaactacc 43035846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 46670045 - 46670012
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttg 75  Q
    ||||||||||||||||||||||||||||||||||    
T  46670045 atttttcttcaaaatataaaaccctcctcatttg 46670012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 462
Target Start/End: Complemental strand, 20855841 - 20855737
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccgg 457  Q
    ||||||||||| |||||| ||| |||| | ||||||||| | |||||||  |||| |||   || |||||||||||||||||||||    ||||||||||    
T  20855841 aaagaaaattgttttttttacatagaatacttcctattggcacaagtaatttattaaaaagccttcagcggtagttaactaccgttgataaaaccgccgg 20855742  T
Q  458 cagtt 462  Q
    |||||    
T  20855741 cagtt 20855737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 444
Target Start/End: Original strand, 51025988 - 51026072
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    |||||||||||||||||||| |||| | ||||||||||| |||||||  |||  |||   ||||||||| ||||||| |||||||    
T  51025988 agaaaattgcttttttgacatagaatacttcctattgacacaagtaatttatcaaaaagcctccagcggcagttaacaaccgtta 51026072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 9119885 - 9119850
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggg 77  Q
    |||||||||||||||||||||| |||||||||||||    
T  9119885 atttttcttcaaaatataaaactctcctcatttggg 9119850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 10466539 - 10466586
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    ||||||||||||||||||||| ||| | ||||||||||| ||||||||    
T  10466539 agaaaattgcttttttgacaatgaatacttcctattgacacaagtaaa 10466586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 52636742 - 52636781
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  52636742 atttttcttcataatataaaaccctcctcatttggagaac 52636781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 11976921 - 11976955
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||||||||||||| |||||    
T  11976921 tttaatatatgttgttataatattcttaatattaa 11976955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 16535775 - 16535809
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  16535775 tttaatctatgttgttataatattcttaaaattaa 16535809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 18319773 - 18319739
Alignment:
Q  41 catttttcttcaaaatataaaaccctcctcatttg 75  Q
    |||||||||||||||||||||||||||| ||||||    
T  18319773 catttttcttcaaaatataaaaccctccccatttg 18319739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 18398908 - 18398942
Alignment:
Q  41 catttttcttcaaaatataaaaccctcctcatttg 75  Q
    |||||||||||||||||||||||||||| ||||||    
T  18398908 catttttcttcaaaatataaaaccctccccatttg 18398942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 23902530 - 23902492
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaa 80  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  23902530 atttttcttcaaaatatgaaaccctcctcatttgaggaa 23902492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 27143262 - 27143296
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||| ||||||||||||||||||||||||    
T  27143262 tttaatatatattgttataatattcttaaaattaa 27143296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 30307356 - 30307390
Alignment:
Q  44 ttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    ||||||||||||||||||| |||||||||||||||    
T  30307356 ttttcttcaaaatataaaatcctcctcatttgggg 30307390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 32649001 - 32648967
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  32649001 tttaatctatgttgttataatattcttaaaattaa 32648967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 40423070 - 40423036
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  40423070 tttaatctatgttgttataatattcttaaaattaa 40423036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 443
Target Start/End: Complemental strand, 40729987 - 40729905
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||||| |||||  ||||| |||  | |||| ||||||||||| ||||||  | ||||||||| ||||||||||||    
T  40729987 gaaaattgcttttctgacattgaaaacttcacaatgacacaagtaaaatacttaaatgccaccagcggtatttaactaccgtt 40729905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 47063766 - 47063800
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||| ||||||||||||||||    
T  47063766 tttaatatatgttgttattatattcttaaaattaa 47063800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 52430572 - 52430538
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||| ||||||||||    
T  52430572 tttaatatatgttgttataatatttttaaaattaa 52430538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 52430655 - 52430617
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaa 80  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  52430655 atttttcttcaaaatataaaactctcctcatttagggaa 52430617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 18396190 - 18396223
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttg 75  Q
    ||||||||||||||||||||||||||| ||||||    
T  18396190 atttttcttcaaaatataaaaccctccccatttg 18396223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 25411708 - 25411667
Alignment:
Q  400 caagtaaaatatttaaatatctccagcggtagttaactaccg 441  Q
    ||||||||||| | ||||| ||||||||||||||||||||||    
T  25411708 caagtaaaatactaaaatacctccagcggtagttaactaccg 25411667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 31428885 - 31428918
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaatta 122  Q
    |||||| |||||||||||||||||||||||||||    
T  31428885 tttaatctatgttgttataatattcttaaaatta 31428918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 43167088 - 43167055
Alignment:
Q  90 ttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||||||| ||||||||||    
T  43167088 ttaatatatgttgttataatatttttaaaattaa 43167055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 368050 - 368086
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  368050 atttttcttcataatacaaaaccctcctcatttgggg 368086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 444
Target Start/End: Complemental strand, 2333909 - 2333821
Alignment:
Q  356 tcaaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    |||||||||||||||||| ||||| | |||| |||  | |||| ||||||||||| ||||||  | ||| |||| |||||| |||||||    
T  2333909 tcaaagaaaattgcttttctgacataaaaaacttcacaatgacacaagtaaaatacttaaatgcccccaacggttgttaacaaccgtta 2333821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 12024499 - 12024547
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    |||||||||| |||| |||||| ||||| ||||||||||| ||||||||    
T  12024499 aagaaaattgattttctgacaatgaaaacttcctattgacacaagtaaa 12024547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 35959177 - 35959213
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  35959177 atttttcttcataatacaaaaccctcctcatttgggg 35959213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 36505759 - 36505807
Alignment:
Q  395 tgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||| ||| ||||||| ||||||| | ||||||||||||||||||||||    
T  36505759 tgacacaaataaaatacttaaatacccccagcggtagttaactaccgtt 36505807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 45936604 - 45936652
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    ||||||||||||||| ||||| |||| | ||||||||||| ||||||||    
T  45936604 aagaaaattgcttttctgacatagaatacttcctattgacacaagtaaa 45936652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 48620260 - 48620296
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  48620260 attttacttcaaaatataaaaccctcctcatctgggg 48620296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 52594621 - 52594589
Alignment:
Q  91 taatatatgttgttataatattcttaaaattaa 123  Q
    |||| ||||||||||||||||||||||||||||    
T  52594621 taatctatgttgttataatattcttaaaattaa 52594589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 361 - 462
Target Start/End: Complemental strand, 41964865 - 41964764
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccggcag 460  Q
    ||||||||||||| |||||  |||||||||| ||||||  ||||||| || |||||  || |||||||||||||||||||||||| |||||||||| |||    
T  41964865 gaaaattgcttttctgacattgaaaagttccaattgacataagtaaattacttaaacgtccccagcggtagttaactaccgttatgcaaaccgccgacag 41964766  T
Q  461 tt 462  Q
    ||    
T  41964765 tt 41964764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 444
Target Start/End: Original strand, 43349576 - 43349658
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||||||  | |||||| |||||||| ||||||||||||||    
T  43349576 gaaaattgcttttttgacaaaggaaagtttctattgacacaagtaaaatacatcaatatc-ccagcggtggttaactaccgtta 43349658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 1299149 - 1299066
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||||||||||||||||| || ||| ||||||||||| ||| |||  ||| ||| |  ||||||||||||||||||||||||    
T  1299149 agaaaattgcttttttgacataggaaacttcctattgacacaaataatgtatataattgcctccagcggtagttaactaccgtt 1299066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 453
Target Start/End: Complemental strand, 5569398 - 5569315
Alignment:
Q  370 ttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccg 453  Q
    |||||| |||| ||| ||||||||||||| |||||||||||  ||||||||   |||||||||||||||||||| | |||||||    
T  5569398 tttttttacaatgaatagttcctattgacacaagtaaaatacgtaaatatccttagcggtagttaactaccgttctgcaaaccg 5569315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 7391508 - 7391469
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  7391508 atttttcttcaaaatataaaaccctccttatttggggaac 7391469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 18792707 - 18792628
Alignment:
Q  364 aattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||||||||||||| | |||| ||| ||  ||| ||||||||||| |||||| |||||||| ||| ||||||||||||    
T  18792707 aattgcttttttgacataaaaaacttcataaagacacaagtaaaatacttaaatgtctccagcagtaattaactaccgtt 18792628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 1278022 - 1278056
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  1278022 tttaatatatgttgttataatattcttaaaattaa 1278056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 3614408 - 3614482
Alignment:
Q  388 ttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccggcagtt 462  Q
    |||||||| || |||||||||||  |||||  | |||||||||||||||||||||| | ||||||| ||||||||    
T  3614408 ttcctattaacacaagtaaaatacgtaaatgcccccagcggtagttaactaccgttctgcaaaccggcggcagtt 3614482  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 42013597 - 42013647
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaata 410  Q
    ||||||||||||||||||||| ||||  ||||||||||| |||||||||||    
T  42013597 agaaaattgcttttttgacaatgaaatcttcctattgacacaagtaaaata 42013647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 438
Target Start/End: Complemental strand, 3615399 - 3615322
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaacta 438  Q
    |||||||||||||||||||| ||| | ||||||||||| ||| |||||||  |||||  | ||| |||||||||||||    
T  3615399 gaaaattgcttttttgacaatgaatacttcctattgacacaaataaaatacgtaaatgcccccaacggtagttaacta 3615322  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 462
Target Start/End: Complemental strand, 46529585 - 46529481
Alignment:
Q  358 aaagaaaattgcttttttgac-aaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgttatccaaaccgccg 456  Q
    ||||||||||| |||| |||| |||| ||||||| |||||||  ||||||||||  ||||||  ||| |  ||||||||||||||||||  |||||||||    
T  46529585 aaagaaaattgtttttctgactaaaggaaagttcatattgacataagtaaaatacataaatacatcc-gatgtagttaactaccgttatttaaaccgccg 46529487  T
Q  457 gcagtt 462  Q
    ||||||    
T  46529486 gcagtt 46529481  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 47868542 - 47868505
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgac 398  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  47868542 gaaaattgcttttttgacatagaaaagttcctattgac 47868505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 31055359 - 31055395
Alignment:
Q  45 tttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31055359 tttctttaaaatataaaaccctcctcatttggggaac 31055395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 410
Target Start/End: Complemental strand, 42014659 - 42014607
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaata 410  Q
    |||||||||||||||| |||||| ||||| || |||||||| |||||||||||    
T  42014659 aaagaaaattgcttttctgacaatgaaaaatttctattgacacaagtaaaata 42014607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 441
Target Start/End: Original strand, 45075208 - 45075288
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccg 441  Q
    |||||||| |||| |||||| ||||| ||||||||||| ||||||||||| | ||||  | ||||||| ||||||| ||||    
T  45075208 gaaaattgtttttctgacaatgaaaacttcctattgacacaagtaaaatactaaaatgcccccagcggcagttaacaaccg 45075288  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 46790692 - 46790744
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaata 410  Q
    |||||||||||||||||||||| |||||||||| ||  ||| |||||||||||    
T  46790692 aaagaaaattgcttttttgacatagaaaagttcataaagacacaagtaaaata 46790744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 2204017 - 2204064
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    ||||||||||||||||||||| ||| | ||||||||||| ||||||||    
T  2204017 agaaaattgcttttttgacaatgaatacttcctattgacacaagtaaa 2204064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 123
Target Start/End: Complemental strand, 7391376 - 7391345
Alignment:
Q  92 aatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||||||||||||||||    
T  7391376 aatatatgttgttataatattcttaaaattaa 7391345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 439
Target Start/End: Complemental strand, 27543757 - 27543718
Alignment:
Q  400 caagtaaaatatttaaatatctccagcggtagttaactac 439  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  27543757 caagtaaaatattgaaatatctcccgcggtagttaactac 27543718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 1805156 - 1805106
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaata 410  Q
    |||||| |||||||||||||| ||||  ||||||||||| |||||||||||    
T  1805156 agaaaaatgcttttttgacaatgaaatcttcctattgacacaagtaaaata 1805106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 4788000 - 4787966
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||| ||||||||||    
T  4788000 tttaatatatgttgttataatatttttaaaattaa 4787966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 12624371 - 12624337
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||| ||||||||||||||||||||||||    
T  12624371 tttaatatatattgttataatattcttaaaattaa 12624337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 407
Target Start/End: Complemental strand, 17185210 - 17185160
Alignment:
Q  357 caaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    |||||||||||||||||| ||||| ||| | ||||||||||| ||||||||    
T  17185210 caaagaaaattgctttttcgacaatgaatacttcctattgacacaagtaaa 17185160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 23019800 - 23019766
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||| |||||||||||||||||||||    
T  23019800 tttaatatatgtttttataatattcttaaaattaa 23019766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 30081452 - 30081486
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||| ||||||    
T  30081452 tttaatatatgttgttataatattcttataattaa 30081486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 33810205 - 33810175
Alignment:
Q  93 atatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||    
T  33810205 atatatgttgttataatattcttaaaattaa 33810175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 36845438 - 36845404
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  36845438 tttaatctatgttgttataatattcttaaaattaa 36845404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 42267004 - 42266970
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  42267004 tttaatctatgttgttataatattcttaaaattaa 42266970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 444
Target Start/End: Complemental strand, 42737010 - 42736924
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    ||||||||||| |||||||||| |||| | ||||||||||| |||||||  |||  |||   ||||||||| ||||||| |||||||    
T  42737010 aaagaaaattgtttttttgacatagaatacttcctattgacacaagtaatttatcaaaaagcctccagcggcagttaacaaccgtta 42736924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 46611928 - 46611894
Alignment:
Q  41 catttttcttcaaaatataaaaccctcctcatttg 75  Q
    |||||||||||||||||||||||||||| ||||||    
T  46611928 catttttcttcaaaatataaaaccctccccatttg 46611894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 443
Target Start/End: Complemental strand, 47317864 - 47317782
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||||| |||||  ||||| ||   | |||| ||||||||||| ||||||  | ||||||||||||||||||||||    
T  47317864 gaaaattgcttttctgacattgaaaactttacaatgacacaagtaaaatacttaaatgcccccagcggtagttaactaccgtt 47317782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 30302023 - 30301990
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttg 75  Q
    |||||||||||||||||||||| |||||||||||    
T  30302023 atttttcttcaaaatataaaactctcctcatttg 30301990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 31180065 - 31180032
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttg 75  Q
    |||||||||||||||||||||| |||||||||||    
T  31180065 atttttcttcaaaatataaaactctcctcatttg 31180032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 1277919 - 1277951
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcattt 74  Q
    ||||||||||||||||||||||| |||||||||    
T  1277919 atttttcttcaaaatataaaaccatcctcattt 1277951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 441
Target Start/End: Original strand, 10552700 - 10552776
Alignment:
Q  365 attgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccg 441  Q
    |||||||||||||||  ||| | ||||||||||| |||||||  || | |||  |||||||||||||||||| ||||    
T  10552700 attgcttttttgacatggaatacttcctattgacacaagtaatttactaaaaagtctccagcggtagttaacaaccg 10552776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 13697263 - 13697299
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  13697263 atttttcttcataatacaaaaccctcctcatttgggg 13697299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 22556797 - 22556761
Alignment:
Q  45 tttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    ||||||||||||||||||| || ||||||||||||||    
T  22556797 tttcttcaaaatataaaactcttctcatttggggaac 22556761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 24924680 - 24924640
Alignment:
Q  41 catttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    |||||||||||| |||| ||||||||||||||||| |||||    
T  24924680 catttttcttcataatacaaaaccctcctcatttgaggaac 24924640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 444
Target Start/End: Complemental strand, 31594387 - 31594303
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    ||||||||| |||| ||| |  |||||||||| |||||| |||||||||||  ||||| || ||| |||| |||||| |||||||    
T  31594387 agaaaattgtttttctgatattgaaaagttccaattgacacaagtaaaatacataaatgtccccaacggttgttaacaaccgtta 31594303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 33187842 - 33187810
Alignment:
Q  91 taatatatgttgttataatattcttaaaattaa 123  Q
    |||||||| ||||||||||||||||||||||||    
T  33187842 taatatatattgttataatattcttaaaattaa 33187810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 444
Target Start/End: Complemental strand, 43352176 - 43352092
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    ||||||||| |||| |||||  |||||||| | |||||| |||||||||||  |||||   |||||||| |||||||| ||||||    
T  43352176 agaaaattgtttttctgacattgaaaagtttcaattgacacaagtaaaatacctaaatggttccagcggcagttaactgccgtta 43352092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 47863778 - 47863826
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaa 406  Q
    |||||||||||||||||||||| || ||  ||||||||||| |||||||    
T  47863778 aaagaaaattgcttttttgacataggaagcttcctattgacacaagtaa 47863826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 437
Target Start/End: Original strand, 44070750 - 44070823
Alignment:
Q  364 aattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaact 437  Q
    ||||||||||||||||| ||||  ||||||||||| |||||||||||  |||||  ||||||||||||||||||    
T  44070750 aattgcttttttgacaatgaaacattcctattgacacaagtaaaatacgtaaatgcctccagcggtagttaact 44070823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 31584865 - 31584826
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31584865 atttttcttcaaaatataaaaccctcctcatttggggaac 31584826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 9087562 - 9087525
Alignment:
Q  44 ttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9087562 ttttcttcaaaatataaaaccctcctcatttggggaac 9087525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 443
Target Start/End: Original strand, 19507796 - 19507880
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||||||||||||||||||| ||| | ||||||||||| ||| |||||||  |||||  | |||| |||||| ||||||||||    
T  19507796 aagaaaattgcttttttgacaatgaatacttcctattgacacaattaaaatacgtaaatgcccccagtggtagtaaactaccgtt 19507880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 22712268 - 22712185
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||||||||||||| ||| | ||||||||||| ||||||||  || | |||  | | ||||||||||||||||||||    
T  22712268 agaaaattgcttttttgacaatgaataattcctattgacacaagtaaatgatgttaatgcccctagcggtagttaactaccgtt 22712185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 443
Target Start/End: Original strand, 31500779 - 31500862
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||||||||||| |||||| ||||| ||| ||||||| ||||||||||| | ||||  || |||||| ||||||| ||||||    
T  31500779 agaaaattgcttttctgacaatgaaaacttcatattgacacaagtaaaatactaaaatgccttcagcggcagttaacaaccgtt 31500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 11522177 - 11522143
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  11522177 tttaatatatgttgttataatattcttaaaattaa 11522143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 44656747 - 44656713
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  44656747 tttaatatatgttgttataatattcttaaaattaa 44656713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 443
Target Start/End: Complemental strand, 31854316 - 31854231
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||||||||||||||||| | || ||| |||  | |||| ||||||||||| | ||||||| |||||| ||||||| |||||||    
T  31854316 aaagaaaattgcttttttgatataggaaacttcacaatgacacaagtaaaatactgaaatatccccagcgatagttaattaccgtt 31854231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 6978860 - 6978812
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    |||||||||||||||||||||| ||| | ||||||||||| ||||||||    
T  6978860 aagaaaattgcttttttgacaatgaatatttcctattgacacaagtaaa 6978812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 11522280 - 11522240
Alignment:
Q  42 atttttcttcaaaa-tataaaaccctcctcatttggggaac 81  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  11522280 atttttcttcaaaaatataaaaccctcctcatttggggaac 11522240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 15803169 - 15803205
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    |||||||||||||||||||||||||||||| ||||||    
T  15803169 atttttcttcaaaatataaaaccctcctcagttgggg 15803205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 36870244 - 36870280
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    |||||||||||||||| ||||||||||||||||||||    
T  36870244 atttttcttcaaaatagaaaaccctcctcatttgggg 36870280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 44954096 - 44954064
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcattt 74  Q
    |||||||||||||||||||||||||||||||||    
T  44954096 atttttcttcaaaatataaaaccctcctcattt 44954064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 2121370 - 2121287
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||| ||||||||||  ||| | ||||||||||| |||||||  || | |||  |||||| ||||||||||||||||||    
T  2121370 agaaaattgtttttttgacatggaatacttcctattgacacaagtaatttactaaaaagtctccaacggtagttaactaccgtt 2121287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 30072161 - 30072126
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggg 77  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30072161 atttttcttcaaaatataaaatcctcctcatttggg 30072126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 441
Target Start/End: Original strand, 31853667 - 31853746
Alignment:
Q  362 aaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccg 441  Q
    |||||||||||| |||||  ||||| ||   | |||| ||| ||||||||| |||||||||||||| |||||||||||||    
T  31853667 aaaattgcttttctgacattgaaaactttacaatgacacaaataaaatattaaaatatctccagcgatagttaactaccg 31853746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 39181059 - 39181098
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  39181059 atttttcttcaaaatataaaactctcctcatttgaggaac 39181098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 443
Target Start/End: Complemental strand, 40614822 - 40614739
Alignment:
Q  361 gaaaattgcttttttgaca-aagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||||||||||| || |||| ||| ||  ||| ||||||||||| ||||||  | ||||| ||||||||||||||||    
T  40614822 gaaaattgcttttttgacataaaaaaacttcataaagacacaagtaaaatacttaaatgcccccagcagtagttaactaccgtt 40614739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 43190546 - 43190487
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaatcataagtattaatttatcactctc 148  Q
    |||||| ||||||||||||||||||||||||||||  |||   |||||||||||| ||||    
T  43190546 tttaatctatgttgttataatattcttaaaattaaaaatagacattaatttatcattctc 43190487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 443
Target Start/End: Original strand, 2119445 - 2119527
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||||| |||| |||||| ||||| ||| ||||||| ||||||||||||| ||||    ||||||| ||||||| ||||||    
T  2119445 gaaaattgattttctgacaatgaaaacttcatattgacacaagtaaaatattgaaatgctcccagcggcagttaacaaccgtt 2119527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 27987753 - 27987787
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||| ||||||||||||||||||||    
T  27987753 tttaatatatgttgatataatattcttaaaattaa 27987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 28074286 - 28074320
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||| ||||||||||||||||||||    
T  28074286 tttaatatatgttgatataatattcttaaaattaa 28074320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 31298897 - 31298851
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    ||||||||||||||||| | |||||| ||||||||||| ||||||||    
T  31298897 gaaaattgcttttttgatatagaaaacttcctattgacacaagtaaa 31298851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 36870327 - 36870361
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||| |||||||||||||||||||||||||    
T  36870327 tttaatatacgttgttataatattcttaaaattaa 36870361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 42946721 - 42946687
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||| |||||||||||||||    
T  42946721 tttaatatatgttgttatactattcttaaaattaa 42946687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 44954017 - 44953983
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||| |||||||||||||||||||||    
T  44954017 tttaatatatgttattataatattcttaaaattaa 44953983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 31584763 - 31584734
Alignment:
Q  89 tttaatatatgttgttataatattcttaaa 118  Q
    ||||||||||||||||||||||||||||||    
T  31584763 tttaatatatgttgttataatattcttaaa 31584734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 44656846 - 44656809
Alignment:
Q  44 ttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  44656846 ttttcttcaaaatataaaatcatcctcatttggggaac 44656809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 4666219 - 4666251
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaatt 121  Q
    |||||||||| ||||||||||||||||||||||    
T  4666219 tttaatatatcttgttataatattcttaaaatt 4666251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 12941898 - 12941862
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  12941898 atttttcttcaaaatataaaatccttctcatttgggg 12941862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 30312405 - 30312354
Alignment:
Q  96 tatgttgttataatattcttaaaattaatcataagtattaatttatcactctc 148  Q
    |||||| |||||||||||||| | |||||||||||||||| ||||||| ||||    
T  30312405 tatgttattataatattcttata-ttaatcataagtattagtttatcattctc 30312354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 437
Target Start/End: Original strand, 31297640 - 31297716
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaact 437  Q
    ||||||||||||| ||||| |||| | ||||||||||| ||||||||  ||  || || ||||| ||||||||||||    
T  31297640 gaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgatcaaattacctccaacggtagttaact 31297716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 33318094 - 33318042
Alignment:
Q  91 taatatatgttgttataatattcttaaaattaatcataagtattaatttatca 143  Q
    |||| |||||| ||||||||||| |||||||||||||||  | ||||||||||    
T  33318094 taatctatgttattataatattcataaaattaatcataaacaataatttatca 33318042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 440
Target Start/End: Complemental strand, 44329805 - 44329721
Alignment:
Q  356 tcaaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactacc 440  Q
    ||||||||||||| |||||||||| | || | ||||||||| | ||||||||  | | || || |||||||| ||||||||||||    
T  44329805 tcaaagaaaattgtttttttgacataaaatatttcctattggcacaagtaaatgactaaattacctccagcgctagttaactacc 44329721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 443
Target Start/End: Original strand, 2601 - 2686
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||||||||||||| |||||| || || ||||||||||| ||||||||||| | |||| ||  |||||| |||||||| |||||    
T  2601 aaagaaaattgcttttctgacaatgacaacttcctattgacacaagtaaaatactaaaatgtcctcagcggcagttaactgccgtt 2686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 1839920 - 1839884
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    |||||||||||||||||||||||||||||||||||||    
T  1839920 atttttcttcaaaatataaaaccctcctcatttgggg 1839884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 40494160 - 40494100
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatc 420  Q
    ||||||||| |||| |||||| ||||| ||||||||||| ||||||||||| |||||||||    
T  40494160 agaaaattgattttctgacaatgaaaacttcctattgacacaagtaaaatacttaaatatc 40494100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 5911525 - 5911486
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  5911525 atttttctttaaaatataaaaccctcctcatttggggaac 5911486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 28416260 - 28416221
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  28416260 atttttcttcaaaatataaaaccctccttatttggggaac 28416221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 41455238 - 41455273
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggg 77  Q
    ||||||||||||||||||||||||||||||||||||    
T  41455238 atttttcttcaaaatataaaaccctcctcatttggg 41455273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 41455343 - 41455377
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||||||||||||||    
T  41455343 tttaatatatgttgttataatattcttaaaattaa 41455377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 443
Target Start/End: Original strand, 16583187 - 16583272
Alignment:
Q  358 aaagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    ||||||||||||||||||||||  ||| | ||||||||||| |||||||  || | |||   | ||||||||||||||||||||||    
T  16583187 aaagaaaattgcttttttgacatggaatacttcctattgacacaagtaatttactaaaaagcccccagcggtagttaactaccgtt 16583272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 6253664 - 6253584
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccg 441  Q
    ||||||||||||| | ||| |||||| |||  | |||| ||||||||||| |||||| || || |||||||||||||||||    
T  6253664 gaaaattgcttttctaacatagaaaacttcacaatgacacaagtaaaatacttaaatgtcccccgcggtagttaactaccg 6253584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 11877011 - 11876941
Alignment:
Q  89 tttaatatatgttgttataatattcttaaa-----------attaatcataagtattaatttatcactctc 148  Q
    ||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  11877011 tttaatatatgttgttataatattcttaaacttaaaaatatattaatcataagtattaatttatcactctc 11876941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 11892018 - 11891948
Alignment:
Q  89 tttaatatatgttgttataatattcttaaa-----------attaatcataagtattaatttatcactctc 148  Q
    ||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  11892018 tttaatatatgttgttataatattcttaaacttaaaaatatattaatcataagtattaatttatcactctc 11891948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 20495611 - 20495563
Alignment:
Q  362 aaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaata 410  Q
    |||||||||||||||||| |||||| ||| ||||||| |||||||||||    
T  20495611 aaaattgcttttttgacatagaaaacttcgtattgacacaagtaaaata 20495563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 1839817 - 1839778
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaatcata 128  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  1839817 tttaatatatgttgttataatatttttaaaattaaacata 1839778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 5858363 - 5858328
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttggg 77  Q
    |||||||||||||||||||||||||| |||||||||    
T  5858363 atttttcttcaaaatataaaaccctcatcatttggg 5858328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 33412205 - 33412170
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaat 124  Q
    |||||| |||||||||||||||||||||||||||||    
T  33412205 tttaatctatgttgttataatattcttaaaattaat 33412170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 123
Target Start/End: Original strand, 34349802 - 34349833
Alignment:
Q  92 aatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||||||||||||||||    
T  34349802 aatatatgttgttataatattcttaaaattaa 34349833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 8948709 - 8948743
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||||||||| |||||||||    
T  8948709 tttaatatatgttgttataatattcataaaattaa 8948743  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 10878779 - 10878745
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||||||||||||||| ||||||||||    
T  10878779 tttaatatatgttgttataatatttttaaaattaa 10878745  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 12506294 - 12506260
Alignment:
Q  44 ttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    ||||||||||||||| |||||||||||||||||||    
T  12506294 ttttcttcaaaatattaaaccctcctcatttgggg 12506260  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 13865089 - 13865055
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  13865089 tttaatctatgttgttataatattcttaaaattaa 13865055  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 16424222 - 16424256
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||| ||||||||||||||||||||||    
T  16424222 tttaatatatgtagttataatattcttaaaattaa 16424256  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 28416168 - 28416134
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||| |||||||||||||||||||||||||    
T  28416168 tttaatatacgttgttataatattcttaaaattaa 28416134  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 28517257 - 28517223
Alignment:
Q  89 tttaatatatgttgttataatattcttaaaattaa 123  Q
    |||||||||||| ||||||||||||||||||||||    
T  28517257 tttaatatatgtagttataatattcttaaaattaa 28517223  T

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Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 41270383 - 41270333
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaata 410  Q
    ||||||||||||||||||||  ||||| ||| ||||||| |||||||||||    
T  41270383 agaaaattgcttttttgacagtgaaaatttcatattgacacaagtaaaata 41270333  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 441
Target Start/End: Original strand, 6253301 - 6253382
Alignment:
Q  360 agaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccg 441  Q
    |||||||||||||| | ||| |||||| |||  | |||| ||||||||||| ||||||  | ||| ||||||||||||||||    
T  6253301 agaaaattgcttttctaacatagaaaacttcacaatgacacaagtaaaataattaaatgcccccaacggtagttaactaccg 6253382  T

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Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 16024570 - 16024541
Alignment:
Q  89 tttaatatatgttgttataatattcttaaa 118  Q
    ||||||||||||||||||||||||||||||    
T  16024570 tttaatatatgttgttataatattcttaaa 16024541  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 26701829 - 26701874
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaa 406  Q
    ||||||||||||||||||| || ||| ||||||||||| |||||||    
T  26701829 gaaaattgcttttttgacataggaaacttcctattgacacaagtaa 26701874  T

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Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 32158850 - 32158883
Alignment:
Q  90 ttaatatatgttgttataatattcttaaaattaa 123  Q
    ||||||||||||||||||||||| ||||||||||    
T  32158850 ttaatatatgttgttataatatttttaaaattaa 32158883  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 32239 - 32271
Alignment:
Q  91 taatatatgttgttataatattcttaaaattaa 123  Q
    |||| ||||||||||||||||||||||||||||    
T  32239 taatttatgttgttataatattcttaaaattaa 32271  T

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Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 13406412 - 13406448
Alignment:
Q  45 tttcttcaaaatataaaaccctcctcatttggggaac 81  Q
    |||||||||||||||||||  ||||||||||||||||    
T  13406412 tttcttcaaaatataaaacaatcctcatttggggaac 13406448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 13406514 - 13406542
Alignment:
Q  92 aatatatgttgttataatattcttaaaat 120  Q
    |||||||||||||||||||||||||||||    
T  13406514 aatatatgttgttataatattcttaaaat 13406542  T

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Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 31598520 - 31598488
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcattt 74  Q
    ||||||||||||||||||||| |||||||||||    
T  31598520 atttttcttcaaaatataaaatcctcctcattt 31598488  T

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Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 39193912 - 39193948
Alignment:
Q  42 atttttcttcaaaatataaaaccctcctcatttgggg 78  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  39193912 atttttcttcataatataaaaccctcttcatttgggg 39193948  T

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Target: scaffold0146 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 32402 - 32324
Alignment:
Q  364 aattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtt 443  Q
    |||||||||||||||| | |||| |||  | |||| ||||||||||| ||||||  | ||||||||||||||||||||||    
T  32402 aattgcttttttgacata-aaaacttcacaatgacacaagtaaaatacttaaatgcccccagcggtagttaactaccgtt 32324  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 130612 - 130566
Alignment:
Q  361 gaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    ||||||||||||||||||| |||| | ||||||||||| ||||||||    
T  130612 gaaaattgcttttttgacatagaatacttcctattgacacaagtaaa 130566  T

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Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 127202 - 127250
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaa 407  Q
    ||||||||||||||| |||||||||| | ||||||| ||| ||||||||    
T  127202 aagaaaattgcttttctgacaaagaatacttcctatcgacacaagtaaa 127250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 444
Target Start/End: Complemental strand, 5997 - 5912
Alignment:
Q  359 aagaaaattgcttttttgacaaagaaaagttcctattgacccaagtaaaatatttaaatatctccagcggtagttaactaccgtta 444  Q
    ||||||||||||||| |||||  |||||||| | |||||| |||||||||||  |||||    ||||||||||| ||| |||||||    
T  5997 aagaaaattgcttttctgacattgaaaagtttcaattgacacaagtaaaatacgtaaatgctcccagcggtagtaaacaaccgtta 5912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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