View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18132_low_13 (Length: 409)
Name: NF18132_low_13
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 249 - 401
Target Start/End: Complemental strand, 39272963 - 39272811
Alignment:
| Q |
249 |
gtaggaacacaatttcaacaccattcacaaacagaactgggcactttcaattccatatatataggaaatggaaaaacaaaacatcatatatcgcggttgg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272963 |
gtaggaacacaatttcaacaccattcacaaacagaactgggcactttcaattccatatatataggaaatggaaaaacaaaacatcatatatcgcggttgg |
39272864 |
T |
|
| Q |
349 |
tgtccttccaactcctacaattaccaagtccatgaagtaactgagcctatgct |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272863 |
tgtccttccaactcctacaattaccaagtccatgaagtaactgagcctatgct |
39272811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 39273099 - 39273006
Alignment:
| Q |
69 |
aaactttatggtaaaaaggagggagaggtattagatcctatccaatcactttatatcattacagaatatataactaatggacatatatactcaa |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39273099 |
aaactttatggtaaaaaggagggagaggtattagatcctatccaatcactttatatcattacagaatatataactaatggacatatatactcaa |
39273006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 57
Target Start/End: Complemental strand, 39273129 - 39273098
Alignment:
| Q |
26 |
ataatatgcctcaaatattcatcttatttcaa |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39273129 |
ataatatgcctcaaatattcatcttatttcaa |
39273098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University