View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_low_15 (Length: 391)
Name: NF18132_low_15
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 176 - 382
Target Start/End: Complemental strand, 26170328 - 26170124
Alignment:
| Q |
176 |
gaaagattgaatcactctaattatgaagtctctctacctaacatgtttagagtgtgttttccaactccattttctcacgtaaaagctccactcctagctc |
275 |
Q |
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| T |
26170328 |
gaaagattgaatcactctaattatgaagtctctgtacctaacatgtttagagtgtgttttccaactccattttctcacgtaaaagctccactcctagctc |
26170229 |
T |
|
| Q |
276 |
ttaagtttccttaaatatatgctcttttggtaatgccgnnnnnnnnnnnnnnattcaagaactccacaagaagcattcaacacaagaatcatgatcttct |
375 |
Q |
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|||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26170228 |
ttaaatttctttaaatatatgctcttttggtaatgccg--tctctctctctcattcaagaactccacaagaagcattcaacacaagaatcatgatcttct |
26170131 |
T |
|
| Q |
376 |
ctctgtg |
382 |
Q |
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|| |||| |
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| T |
26170130 |
ctttgtg |
26170124 |
T |
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