View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_low_16 (Length: 383)
Name: NF18132_low_16
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 20062234 - 20062582
Alignment:
| Q |
19 |
agaagctgcacttggactggcctacaagaatgaagatctgtcttggtatagcaaaggggttagcttatcttcatgaggaatcaacattgaaaatagtaca |
118 |
Q |
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| T |
20062234 |
agaagctgcacttggactggcctacaagaatgaagatctgtcttggtatagcaaaggggttagcttatcttcatgaggaatcaacattgaaaatagtaca |
20062333 |
T |
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| Q |
119 |
cagggatattaagccaactaacgtattacttgacaaggatcttaatgccaagatctctgactttggtttagctaagcttaatgaagacgggaatacccat |
218 |
Q |
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| T |
20062334 |
cagggatattaagccaactaacgtattacttgacaaggatcttaatgccaagatctctgactttggtttagctaagcttaatgaagacgggaatacccat |
20062433 |
T |
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| Q |
219 |
atcagtacacgaatagctggaacaatgttagtacttgccacaaatatttagcttgacccaaagtctttgttcaaaattagttgatattttgttattagca |
318 |
Q |
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| T |
20062434 |
atcagtacacgaatagctggaacaatgttagtacttgccacaactatttagcttgacccaaagtctttgttcaaaattagttgatattttgttattagca |
20062533 |
T |
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| Q |
319 |
ttaacaaccaagactttgttcattatcgctctaagttatacagcatctt |
367 |
Q |
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| T |
20062534 |
ttaacaaccaagactttgttcattatcgctctaagttatacagcatctt |
20062582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 31462952 - 31463175
Alignment:
| Q |
28 |
acttggactggcctacaagaatgaagatctgtcttggtatagcaaaggggttagcttatcttcatgaggaatcaacattgaaaatagtacacagggatat |
127 |
Q |
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| T |
31462952 |
acttggactggcgtacgagaatgaagatctgtgtcgggatagcaaggggtttagcttaccttcatgaggaatcaagattgaaaatagtacatagagatat |
31463051 |
T |
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| Q |
128 |
taagccaactaacgtattacttgacaaggatcttaatgccaagatctctgactttggtttagctaagcttaatgaagacgggaatacccatatcagtaca |
227 |
Q |
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||| |||| ||||| ||||| || ||| |||| ||||| ||||||||||| || |||||||| |||||| ||||||| | |||||||||||||| ||| |
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| T |
31463052 |
taaagcaaccaacgtcttactcgataagaatctaaatgcaaagatctctgatttcggtttagcgaagcttgatgaagaagaaaatacccatatcagcaca |
31463151 |
T |
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| Q |
228 |
cgaatagctggaacaatgttagta |
251 |
Q |
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||||||||||| |||||||||||| |
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| T |
31463152 |
cgaatagctgggacaatgttagta |
31463175 |
T |
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