View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_low_17 (Length: 381)
Name: NF18132_low_17
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 11025492 - 11025855
Alignment:
| Q |
1 |
tagctaacgttttattgatttgtacacttgctgcttgagtctcaacctcaagggctttgtatatgttgaatttaggagtggtcaatgcttttggtaatat |
100 |
Q |
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| T |
11025492 |
tagctaacgttttattgatttgtacacttgctgcttgagtctcaacctcaagggctttgtatatgttgaatttaggagtggtcaatgctttcggtaatat |
11025591 |
T |
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| Q |
101 |
tgttttgaaacatatacctgccctcgatgggtcttctaattttttgcacatcgaccaaacacgagcttggggggtgcgaacaccaataggttttttggtt |
200 |
Q |
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| T |
11025592 |
tgttttgaaacatatacctgccctcgatgggtcttctaattttttgcacatcgaccaaacacgagcttggggggtgcgaacacgaataggttttttggtt |
11025691 |
T |
|
| Q |
201 |
gcaatagcaataccaatagcatttgtggtggattcaaacaacatagatattgtcacaatgaggagaacaacgaggtaggttttggtgagagccannnnnn |
300 |
Q |
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| T |
11025692 |
gcaatagcaataccaatagcatttgtggtggattcaaacaacatagatattgtcacaatgaggagaacaacgaggtaggttttggtgagagtcatttttt |
11025791 |
T |
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| Q |
301 |
ncactcttttttctcctcaacgggagaagaggagattaggag-atgaaaaagaagtggggtttg |
363 |
Q |
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| T |
11025792 |
tcactcttttttctcctcaatgggagaagaggagattaggagaatgaaaaaaaagtggggtttg |
11025855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 10891535 - 10891220
Alignment:
| Q |
9 |
gttttattgatttgtacacttgctgcttgagtctcaacctcaagggctttgtatatgttgaatttaggagtggtcaatgcttttggtaatattgttttga |
108 |
Q |
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| T |
10891535 |
gttttattgattcttatacttgtttcttgagtctcaacctcaagggctgtgtatatgttgaatttaggagcgctctctgcttttggtaatattgtattgt |
10891436 |
T |
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| Q |
109 |
aacatatacctgccctcgatgggtcttctaattttttgcacatcgaccaaacacgagcttggggggtgcgaacaccaataggttttttggttgcaatagc |
208 |
Q |
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| T |
10891435 |
aaca---------catcgttgggttttttaatgttttgcacatactcctaacacgagcttcgggggtgcgaataacattagctttttttgtgg------- |
10891352 |
T |
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| Q |
209 |
aataccaatagcatttgtggtggattcaaacaacatagatattgtcacaatgaggagaacaacgaggtaggttttggtgagagcca--nnnnnnncactc |
306 |
Q |
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| T |
10891351 |
-----gaatagcatttgtggtgggtgcaaacaacatagatattatcacaatgaggagaacaacgagatgggttttagtgaaagccattttaatctcactc |
10891257 |
T |
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| Q |
307 |
ttttttctcctcaacgggagaagaggagattaggaga |
343 |
Q |
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||| ||||||||||| ||||||||||||||| |||| |
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| T |
10891256 |
tttgttctcctcaacaagagaagaggagattaagaga |
10891220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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