View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_low_18 (Length: 380)
Name: NF18132_low_18
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 9088119 - 9088240
Alignment:
| Q |
211 |
caaggtacctcaaatattttgataacgtttggatgattaatgatcttcatagctgaaatttctctcttcagctgccaaattcaaattcaacacaagaaaa |
310 |
Q |
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| T |
9088119 |
caaggtacctcaaatattttgataacgtttggatgattaatgatcttcatagctgaaatttctctcttcagctgccaaattcaaattcaacacaagaaaa |
9088218 |
T |
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| Q |
311 |
g-aaaatcaaagatcaatgtcg |
331 |
Q |
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| T |
9088219 |
gaaaaaccaaagatcagtgtcg |
9088240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 9079342 - 9079463
Alignment:
| Q |
211 |
caaggtacctcaaatattttgataacgtttggatgattaatgatcttcatagctgaaatttctctcttcagctgccaaattcaaattcaacacaagaaaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9079342 |
caaggtacctcaaatattttgataacgtttggatgattaataatcttcatagctgaaatttctctcttcagctgccaaattcaaattcaacacaagaaaa |
9079441 |
T |
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| Q |
311 |
g-aaaatcaaagatcaatgtcg |
331 |
Q |
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| T |
9079442 |
gaaaaaccaaagatcagtgtcg |
9079463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 9078853 - 9078981
Alignment:
| Q |
1 |
acaacttacaattttgtcaaatagttctcctccattaaccaactccaagacaatgtaaatctttgttttgcttgccatcacctatgcttaaacagagaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||||| |
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| T |
9078853 |
acaacttacaattttgtcaaatagttctcctccattaaccaactccaaaacaatgtaaatctttgttttgcttgccatcacctgtgcttaagcaaagaac |
9078952 |
T |
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| Q |
101 |
aattaat---gtagttttttcacggtgca |
126 |
Q |
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| T |
9078953 |
cattaatgtagtagttttttcacggtgca |
9078981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 9087630 - 9087758
Alignment:
| Q |
1 |
acaacttacaattttgtcaaatagttctcctccattaaccaactccaagacaatgtaaatctttgttttgcttgccatcacctatgcttaaacagagaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||||| |
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| T |
9087630 |
acaacttacaattttgtcaaatagttctcctccattaaccaactccaaaacaatgtaaatctttgttttgcttgccatcacctgtgcttaagcaaagaac |
9087729 |
T |
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| Q |
101 |
aattaat---gtagttttttcacggtgca |
126 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
9087730 |
cattaatgtagtagttttttcacggtgca |
9087758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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