View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18132_low_19 (Length: 341)

Name: NF18132_low_19
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18132_low_19
NF18132_low_19
[»] chr5 (1 HSPs)
chr5 (39-341)||(35500823-35501125)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 39 - 341
Target Start/End: Original strand, 35500823 - 35501125
Alignment:
Q  39 ttctattaaacaagctctctctggtatgatgagaaagacggcatgtggctggcaagtcgcaacacaaaaaagaatgagaggaaggtcctttttgagaagc 138  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  35500823 ttctattaaacaagctctctctgctatgaagagaaagacggcatgtggctggcaagtggcaacacaaacaagaatgagaggaaggtcctttttgagaagc 35500922  T
Q  139 caagcaaaccccacctctaccccaaccccaagaaaaaccacaatcttaagtataagatgaatggtatcaactgaatatcttagtagagtgctaccccttg 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35500923 caagcaaaccccacctctaccccaaccccaagaaaaaccacaatcttaagtataagatgaatggtatcaactgaatatcttagtagagtgctaccccttg 35501022  T
Q  239 ctgaaaatatcagcataccatgttcttgtgatgtttacgtgttatacagaacacagtgtgaaatatannnnnnnnctctcaaaacaaattttctcatagt 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||    
T  35501023 ctgaaaatatcagcataccatgttcttgtgatgtttacgtgttatacagaacacagtgtgaaatattttttttttctctcaaaacaaattttctcatagt 35501122  T
Q  339 ata 341  Q
    |||    
T  35501123 ata 35501125  T

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