View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18132_low_2 (Length: 786)

Name: NF18132_low_2
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18132_low_2
NF18132_low_2
[»] scaffold0041 (2 HSPs)
scaffold0041 (16-772)||(95714-96470)
scaffold0041 (16-772)||(87698-88462)
[»] chr7 (2 HSPs)
chr7 (16-772)||(40869812-40870568)
chr7 (16-772)||(40877821-40878585)
[»] chr2 (1 HSPs)
chr2 (667-756)||(40352688-40352777)
[»] chr4 (2 HSPs)
chr4 (30-130)||(21716267-21716367)
chr4 (702-756)||(21715642-21715696)
[»] chr1 (3 HSPs)
chr1 (58-139)||(28347335-28347416)
chr1 (661-740)||(28346744-28346823)
chr1 (685-755)||(42730140-42730210)


Alignment Details
Target: scaffold0041 (Bit Score: 709; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 709; E-Value: 0
Query Start/End: Original strand, 16 - 772
Target Start/End: Complemental strand, 96470 - 95714
Alignment:
Q  16 aatcaggccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacct 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  96470 aatcaggccatgacggatcagcagcctgcacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacct 96371  T
Q  116 cattccaggacaccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggaaaataaaccacatcaaac 215  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  96370 cattccaggacaccacctaatctgaagtgtgattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggataataaaccacatcaaac 96271  T
Q  216 ggctgcatattagtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcctt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  96270 ggctgcatattagtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcctt 96171  T
Q  316 taccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttcca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  96170 taccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttcca 96071  T
Q  416 ccctgacgactccaacattatttcgccttttttccctccgaattacaaaacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaagc 515  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  96070 ccctgacgactccaacattatttcgccttttttccctccaaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaagc 95971  T
Q  516 aagtttcttgtcactgagtaatggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaacatgcctgaaatgccacttttcaccatga 615  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95970 aagtttcttgtcactgacaaatggactccatccagttgtcaataaatgcctcttcggcgtgcccctataaacatgcctgaaatgccacttttcaccatga 95871  T
Q  616 acatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccac 715  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95870 acatccttgggatatatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccac 95771  T
Q  716 cattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg 772  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95770 cattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg 95714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 16 - 772
Target Start/End: Complemental strand, 88462 - 87698
Alignment:
Q  16 aatcaggccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacct 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88462 aatcagaccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacct 88363  T
Q  116 cattccaggacaccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggaaaataaaccacatcaaac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  88362 cattccaggacaccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggataataaaccacatcaaac 88263  T
Q  216 ggctgcatattagtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcctt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  88262 ggctgcatattagtaccgagtcttactgcttcaataacttctagagctttcaccttccccctacccatcattccatcacttattagcaatccattacctt 88163  T
Q  316 taccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttcca 415  Q
    |||| ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  88162 taccgtttcttcgaagtttattatcttcctctcccgaaaacgatggaaatcctccgtaaggtggtgcagcacaaattccaattccactaccagatttcca 88063  T
Q  416 ccctga--------cgactccaacattatttcgccttttttccctccgaattacaaaacgtagttcgccgttttcagatctcaaaaacacgactgaatcc 507  Q
    ||||||        |||||||||||||||||||||||||  ||||||||||| ||| | | || |||||||||||||||||||||||||| |  ||||||    
T  88062 ccctgacaaaggatcgactccaacattatttcgccttttagccctccgaattccaacatgaagatcgccgttttcagatctcaaaaacacaatcgaatcc 87963  T
Q  508 ccagaagcaagtttcttgtcactgagtaatggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaacatgcctgaaatgccactttt 607  Q
    ||||| |||||||||||||| ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  87962 ccagacgcaagtttcttgtcgctgacaaaaggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaacgtgcctgaaatgccactttt 87863  T
Q  608 caccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaa 707  Q
    | |||||||||||||||||| | ||  |||||| |||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  87862 cgccatgaacatccttgggaaaaatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaa 87763  T
Q  708 gccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg 772  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  87762 gccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg 87698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 709; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 709; E-Value: 0
Query Start/End: Original strand, 16 - 772
Target Start/End: Original strand, 40869812 - 40870568
Alignment:
Q  16 aatcaggccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacct 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40869812 aatcaggccatgacggatcagcagcctgcacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacct 40869911  T
Q  116 cattccaggacaccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggaaaataaaccacatcaaac 215  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40869912 cattccaggacaccacctaatctgaagtgtgattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggataataaaccacatcaaac 40870011  T
Q  216 ggctgcatattagtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcctt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870012 ggctgcatattagtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcctt 40870111  T
Q  316 taccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttcca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870112 taccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttcca 40870211  T
Q  416 ccctgacgactccaacattatttcgccttttttccctccgaattacaaaacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaagc 515  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870212 ccctgacgactccaacattatttcgccttttttccctccaaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaagc 40870311  T
Q  516 aagtttcttgtcactgagtaatggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaacatgcctgaaatgccacttttcaccatga 615  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870312 aagtttcttgtcactgacaaatggactccatccagttgtcaataaatgcctcttcggcgtgcccctataaacatgcctgaaatgccacttttcaccatga 40870411  T
Q  616 acatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccac 715  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870412 acatccttgggatatatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccac 40870511  T
Q  716 cattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg 772  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870512 cattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg 40870568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 16 - 772
Target Start/End: Original strand, 40877821 - 40878585
Alignment:
Q  16 aatcaggccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacct 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40877821 aatcagaccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacct 40877920  T
Q  116 cattccaggacaccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggaaaataaaccacatcaaac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40877921 cattccaggacaccacctaatctgaagtgccattccaattaaagaagttttcacaaaaaactcaggagtacccgaccgaggataataaaccacatcaaac 40878020  T
Q  216 ggctgcatattagtaccgagtcttactgcttcaataacttctagaactttcaccttccccctacccatcattccatcacttattagtaatccattgcctt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  40878021 ggctgcatattagtaccgagtcttactgcttcaataacttctagagctttcaccttccccctacccatcattccatcacttattagcaatccattacctt 40878120  T
Q  316 taccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttcca 415  Q
    |||| ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  40878121 taccgtttcttcgaagtttattatcttcctctcccgaaaacgatggaaatcctccgtaaggtggtgcagcacaaattccaattccactaccagatttcca 40878220  T
Q  416 ccctga--------cgactccaacattatttcgccttttttccctccgaattacaaaacgtagttcgccgttttcagatctcaaaaacacgactgaatcc 507  Q
    ||||||        |||||||||||||||||||||||||  ||||||||||| ||| | | || |||||||||||||||||||||||||| |  ||||||    
T  40878221 ccctgacaaaggatcgactccaacattatttcgccttttagccctccgaattccaacatgaagatcgccgttttcagatctcaaaaacacaatcgaatcc 40878320  T
Q  508 ccagaagcaagtttcttgtcactgagtaatggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaacatgcctgaaatgccactttt 607  Q
    ||||| |||||||||||||| ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40878321 ccagacgcaagtttcttgtcgctgacaaaaggactccatccagttgtcaacaaatgcctcttcggcgtgcccctataaacgtgcctgaaatgccactttt 40878420  T
Q  608 caccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaa 707  Q
    | |||||||||||||||||| | ||  |||||| |||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  40878421 cgccatgaacatccttgggaaaaatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaa 40878520  T
Q  708 gccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg 772  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878521 gccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg 40878585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 667 - 756
Target Start/End: Original strand, 40352688 - 40352777
Alignment:
Q  667 cgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat 756  Q
    |||||||||||| |||| ||||| |||||||||  ||| || || |||||||||||||||||||| |||||||| || || |||||||||    
T  40352688 cgaggaaaaatcgtttcagcacagtatctaggaacagagaaccctccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat 40352777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 21716367 - 21716267
Alignment:
Q  30 ggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacc 129  Q
    |||||| || ||||||||||||| |  ||||| ||||||||||| ||||| || ||||| || ||||||| || ||||||||||||||| |||| |||||    
T  21716367 ggatcaacaacctgaacagaagcgattgttcccataaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacacc 21716268  T
Q  130 a 130  Q
    |    
T  21716267 a 21716267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 702 - 756
Target Start/End: Complemental strand, 21715696 - 21715642
Alignment:
Q  702 agaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat 756  Q
    |||||| || ||||||||||||||||||||||| ||||| || || |||||||||    
T  21715696 agaaaaccccccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat 21715642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 28347416 - 28347335
Alignment:
Q  58 ttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacaccacctaatctg 139  Q
    |||| |||||||||||||| |  || || ||||||||||||| |||||||||||| || ||||||| |||||| | ||||||    
T  28347416 ttcccataaaccaacttattcgagacgaatcctcggtttcaaaggccatcttgaatcttattccagaacaccatcgaatctg 28347335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 740
Target Start/End: Complemental strand, 28346823 - 28346744
Alignment:
Q  661 tccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaa 740  Q
    |||| |||||| |||||| | || |||||||| ||||||  |||||| || ||||||||||| ||||||||||| |||||    
T  28346823 tccaaacgagggaaaatcgtctcggcacaatacctaggaacagaaaaacctccaccattgttagcatcagattgagtcaa 28346744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 685 - 755
Target Start/End: Complemental strand, 42730210 - 42730140
Alignment:
Q  685 gcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga 755  Q
    ||||| |||||||||  |||||| || ||||| |||||||||||||||||||| || || || ||||||||    
T  42730210 gcacagtatctaggaacagaaaaacctccaccgttgtttgcatcagattgtgttaatgtctttgcaaaaga 42730140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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